Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1700391 84.2 4e-11 seq1615235 84.2 4e-11 >seq1700391 Length=5054 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||| || || || || ||| || || ||||| || || |||| Sbjct 3362 TGGTCGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 3303 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| || || |||||||| || ||||||||||||| Sbjct 3302 GGCTAAAGAAGAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGGG 3243 Query 26003 ACGA 26006 | || Sbjct 3242 ATGA 3239 >seq1615235 Length=3244 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 2990 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 3049 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || || ||||| || Sbjct 3050 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 3108 Query 26004 CGAGG 26008 |||| Sbjct 3109 TGAGG 3113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 891327539419200