Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1536785 190 2e-43 seq1564795 140 4e-28 seq1606314 116 4e-21 seq1659250 107 2e-18 >seq1536785 Length=19290 Score = 190 bits (210), Expect = 2e-43 Identities = 234/320 (73%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || || || ||||| ||| Sbjct 10555 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTAAAGAGACAC 10614 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| || |||| |||||||||||| || || | ||||||||| |||| Sbjct 10615 ATGTAACACCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTTTGGAGT 10674 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || ||||| | | || ||||| | ||| || |||||||| || ||| || Sbjct 10675 CCCAGCTGGGTGATGTTTATCCTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGCTC 10734 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 |||||||||||| ||||||| || ||||| ||||| | |||||||| || || ||| Sbjct 10735 TCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCACGTCACAATC 10794 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | || ||||| || ||||| | ||||| || |||||||| ||| Sbjct 10795 AAGACATCCTGGGAAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGTTTCTCT 10854 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 10855 CTTTCATCCTGGGTCACCAC 10874 Score = 114 bits (126), Expect = 1e-20 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| | ||||||| | || || ||||| |||| || ||||||| ||| ||| Sbjct 7971 CCTTTGCTCACAGTTTGCCTGAAGTAGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATC 8030 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| || || || |||||||| || ||||| || || | ||||| || ||| | Sbjct 8031 ACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGAAGGATGCTGGTAACAGAT 8087 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || ||||| | || | | | | || || || |||||||||||||| ||| Sbjct 8088 GTGGTCCCATTCGGGTGAGACAGAATCTCAGTACTATTTTCAATCCCTGATCCACGGACC 8147 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 |||||| | || || || || || || || || |||||||| || ||||||| Sbjct 8148 TTCCAGGAGATCACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 8199 >seq1564795 Length=5624 Score = 140 bits (154), Expect = 4e-28 Identities = 239/346 (69%), Gaps = 3/346 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || ||| || || ||| || ||||| || Sbjct 5014 CAGATGCTCATCCAAACACTGGATGGCAAAGTGGTCGACATCCATGTCAAACTTATTGGC 5073 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || |||||| | || || | ||| || Sbjct 5074 AAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCTCCAGCTCCAAAAATGCACAC 5130 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| | ||| ||||| || ||||| |||| || || | || ||||| || Sbjct 5131 CGAGCGCACGTGGATGCCATTGCAGGGTGGGTAGGGAGCACCCTTAGAAACATCACCCTC 5190 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| | || ||||||| || ||| || || | Sbjct 5191 AAAGTACTGCCACTTGACAAACCTGGCAACTGCACGCATGTCAGACAAGTCATACTTATG 5250 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || | || || | || | |||||||| || | || Sbjct 5251 GCTCAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTTTGGATAGTGGCCCAGAGATACTC 5310 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397 || |||||||| ||||||| | ||| ||||| |||| | |||| Sbjct 5311 ATCTGGGCTGTATGTGTCCTGTGCCCACTCCATAAACTTTTGGATT 5356 >seq1606314 Length=17433 Score = 116 bits (128), Expect = 4e-21 Identities = 236/348 (68%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| | |||| ||| |||| ||| || || | ||| ||| || ||||| || Sbjct 9263 CAGATGCTTATCCAAACACTGGATGGCAAAGTGGTAGAAGTCCATGTCAAACTTATTGGC 9204 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || || | ||||||| || |||||| | ||| || | ||| || Sbjct 9203 AAACAAGTGGTGC---TTGTGCAACATCCAGTTCAAGTCTCCAGCCCCAAAAATGCACAC 9147 Query 160172 GGA--ACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCT 160229 | || ||| || | | |||| || ||||| ||| || || | | |||||| Sbjct 9146 TAAGTACACATGGGCCCAC---TGCAGGGTGGGTAGGGAGTGCCCTTAGAAATATCACCT 9090 Query 160230 TCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG 160289 || ||||||||||||| ||||||||||| | || |||||||| || |||||| || Sbjct 9089 TCAAAGTACTGCCACTTGACAAACCTGGCAACTGCGTGCATGTCAGACAAGTCGTACTTA 9030 Query 160290 TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | ||| || | | || || || | || || | || | |||||||| || | Sbjct 9029 TGGCTCAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTTTGAATAGTGGCCCAGAGATAC 8970 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397 || || |||||||| ||||||| | ||| ||||| |||| | |||| Sbjct 8969 TCATCTGGGCTGTATGTGTCCTGTGTCCACTCCATAAACTTTTGGATT 8922 >seq1659250 Length=5090 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 3226 AGATATTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 3285 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| ||| || || || | ||| | ||||| | | || Sbjct 3286 GGAATATAATTCTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 3345 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||| | |||||||| |||||| || |||| |||||||||||||| | Sbjct 3346 AGAAAAGCATTGTAAAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 3405 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 3406 AGATAAAATTTACA 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553904558911800