Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq1536785 190 2e-43
seq1564795 140 4e-28
seq1606314 116 4e-21
seq1659250 107 2e-18
>seq1536785
Length=19290
Score = 190 bits (210), Expect = 2e-43
Identities = 234/320 (73%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| || || | ||| | | |||| || ||||| || || || || || || ||||| |||
Sbjct 10555 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTAAAGAGACAC 10614
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
||| | || ||||| || |||| |||||||||||| || || | ||||||||| ||||
Sbjct 10615 ATGTAACACCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTTTGGAGT 10674
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
|||| ||| || ||||| | | || ||||| | ||| || |||||||| || ||| ||
Sbjct 10675 CCCAGCTGGGTGATGTTTATCCTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGCTC 10734
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
|||||||||||| ||||||| || ||||| ||||| | |||||||| || || |||
Sbjct 10735 TCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCACGTCACAATC 10794
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
| || || | || ||||| || ||||| | ||||| || |||||||| |||
Sbjct 10795 AAGACATCCTGGGAAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGTTTCTCT 10854
Query 168450 CGCTCATCTTGAGTTACGAC 168469
| ||||| || || || ||
Sbjct 10855 CTTTCATCCTGGGTCACCAC 10874
Score = 114 bits (126), Expect = 1e-20
Identities = 165/232 (71%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930
|| ||||| | ||||||| | || || ||||| |||| || ||||||| ||| |||
Sbjct 7971 CCTTTGCTCACAGTTTGCCTGAAGTAGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATC 8030
Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990
||||| || || || |||||||| || ||||| || || | ||||| || ||| |
Sbjct 8031 ACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGAAGGATGCTGGTAACAGAT 8087
Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050
|| || ||||| | || | | | | || || || |||||||||||||| |||
Sbjct 8088 GTGGTCCCATTCGGGTGAGACAGAATCTCAGTACTATTTTCAATCCCTGATCCACGGACC 8147
Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|||||| | || || || || || || || || |||||||| || |||||||
Sbjct 8148 TTCCAGGAGATCACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 8199
>seq1564795
Length=5624
Score = 140 bits (154), Expect = 4e-28
Identities = 239/346 (69%), Gaps = 3/346 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || ||| || || ||| || ||||| ||
Sbjct 5014 CAGATGCTCATCCAAACACTGGATGGCAAAGTGGTCGACATCCATGTCAAACTTATTGGC 5073
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || | || ||||||| || |||||| | || || | ||| ||
Sbjct 5074 AAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCTCCAGCTCCAAAAATGCACAC 5130
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | ||| | ||| ||||| || ||||| |||| || || | || ||||| ||
Sbjct 5131 CGAGCGCACGTGGATGCCATTGCAGGGTGGGTAGGGAGCACCCTTAGAAACATCACCCTC 5190
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| ||||||||||| | || ||||||| || ||| || || |
Sbjct 5191 AAAGTACTGCCACTTGACAAACCTGGCAACTGCACGCATGTCAGACAAGTCATACTTATG 5250
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
||| || | | || || || | || || | || | |||||||| || | ||
Sbjct 5251 GCTCAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTTTGGATAGTGGCCCAGAGATACTC 5310
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397
|| |||||||| ||||||| | ||| ||||| |||| | ||||
Sbjct 5311 ATCTGGGCTGTATGTGTCCTGTGCCCACTCCATAAACTTTTGGATT 5356
>seq1606314
Length=17433
Score = 116 bits (128), Expect = 4e-21
Identities = 236/348 (68%), Gaps = 8/348 (2%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| | |||| ||| |||| ||| || || | ||| ||| || ||||| ||
Sbjct 9263 CAGATGCTTATCCAAACACTGGATGGCAAAGTGGTAGAAGTCCATGTCAAACTTATTGGC 9204
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || || | ||||||| || |||||| | ||| || | ||| ||
Sbjct 9203 AAACAAGTGGTGC---TTGTGCAACATCCAGTTCAAGTCTCCAGCCCCAAAAATGCACAC 9147
Query 160172 GGA--ACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCT 160229
| || ||| || | | |||| || ||||| ||| || || | | ||||||
Sbjct 9146 TAAGTACACATGGGCCCAC---TGCAGGGTGGGTAGGGAGTGCCCTTAGAAATATCACCT 9090
Query 160230 TCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG 160289
|| ||||||||||||| ||||||||||| | || |||||||| || |||||| ||
Sbjct 9089 TCAAAGTACTGCCACTTGACAAACCTGGCAACTGCGTGCATGTCAGACAAGTCGTACTTA 9030
Query 160290 TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349
| ||| || | | || || || | || || | || | |||||||| || |
Sbjct 9029 TGGCTCAAGGAGAGTGAGCCAGGGACTTCAGGGATCCTTTGAATAGTGGCCCAGAGATAC 8970
Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397
|| || |||||||| ||||||| | ||| ||||| |||| | ||||
Sbjct 8969 TCATCTGGGCTGTATGTGTCCTGTGTCCACTCCATAAACTTTTGGATT 8922
>seq1659250
Length=5090
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||||||| |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 3226 AGATATTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 3285
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || ||||| |||| ||| || || || | ||| | ||||| | | ||
Sbjct 3286 GGAATATAATTCTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 3345
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||| | |||||||| |||||| || |||| |||||||||||||| |
Sbjct 3346 AGAAAAGCATTGTAAAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 3405
Query 176412 AAATAGAACTTACA 176425
| ||| || |||||
Sbjct 3406 AGATAAAATTTACA 3419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553904558911800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |