Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 122 2e-22
seq1852988 109 9e-19
seq1799193 107 3e-18
seq1731777 107 3e-18
seq3019692 100 5e-16
seq1585181 87.8 3e-12
>seq2031399
Length=344
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || ||| || ||||| || || || | ||| ||
Sbjct 230 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 171
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 170 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 111
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | || || || ||||| ||||| ||
Sbjct 110 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTC 51
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || |||||||| || || ||||| ||
Sbjct 50 CCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1852988
Length=3013
Score = 109 bits (120), Expect = 9e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273
||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| || ||
Sbjct 2148 TTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 2089
Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333
|||| |||| |||| | ||||| || | ||||| || ||||| || || || ||
Sbjct 2088 CTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCC 2029
Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||| || |||||||| || || ||||| ||
Sbjct 2028 TGTAAGGGTTTTTACGAAAATATGCATCTT 1999
>seq1799193
Length=4297
Score = 107 bits (118), Expect = 3e-18
Identities = 139/191 (73%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229
||||| ||| | || ||||| || || || ||| |||| ||| || | ||||||
Sbjct 2065 TCTTTTGAA-TGTTGTAGTCAGACAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAA 2007
Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289
|||| ||| |||||||||||||| |||||||| ||||| || || |||| |||| ||||
Sbjct 2006 ATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTT 1947
Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349
| ||||| || | ||||| || ||||| || || || ||||| || ||||||
Sbjct 1946 TCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATG 1887
Query 193350 AATATTTGCAT 193360
|| || | |||
Sbjct 1886 AAAATCTACAT 1876
>seq1731777
Length=2471
Score = 107 bits (118), Expect = 3e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || ||| || ||||| || || || | || ||
Sbjct 720 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTCTTCC 779
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || |||||||| | ||| || ||||||||| | |||||||| | || ||
Sbjct 780 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTCATACTGG 839
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| ||||| |||| | || || || || | ||||| || ||||| || || ||
Sbjct 840 ATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGATGGTCTTC 899
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| | || ||||||||||| || ||||||||
Sbjct 900 CCCATAAGGGTTTTTACAAAAATCTGCATTTT 931
>seq3019692
Length=452
Score = 100 bits (110), Expect = 5e-16
Identities = 119/160 (74%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || || |||||||| | ||| || ||||||||||| |||||||| ||
Sbjct 180 ATCTTCCAGTTGCTTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTTCCTT 239
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| |||| |||| || |||| || | ||||| | ||||| ||
Sbjct 240 ATCCTGGATCTTGGCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAGTGAT 299
Query 193325 AG-TTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
| ||| ||||| || |||||||||| || ||||| ||
Sbjct 300 GGCCTTTCCCTGTAAGAATTTTTACAAAAATCTGCATCTT 339
>seq1585181
Length=9560
Score = 87.8 bits (96), Expect = 3e-12
Identities = 117/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| |||| || ||| || ||||| | | | | || ||||||||||| ||| |||| ||
Sbjct 3441 ATCTTCTAGTTATTTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTT 3500
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA-CTCAACTTCTAGAGTTA 193323
|||||| || |||| |||| ||| | ||||| |||| ||| | | ||||| |
Sbjct 3501 ATCTTGGATCTTGGCCTTTACATTGTCTTTTGTATC-CAAGAGTTCAGCCTTGAGAGTGA 3559
Query 193324 TAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
| ||||| ||||| || ||||||| || || ||||||||
Sbjct 3560 TGGTTTTCCCTGTAAGGGTTTTTATGAAAATCTGCATTTT 3599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 863316177987600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |