Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2031399 122 2e-22 seq1852988 109 9e-19 seq1799193 107 3e-18 seq1731777 107 3e-18 seq3019692 100 5e-16 seq1585181 87.8 3e-12 >seq2031399 Length=344 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 230 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 171 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| || Sbjct 170 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 111 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | || || || ||||| ||||| || Sbjct 110 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTC 51 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || |||||||| || || ||||| || Sbjct 50 CCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1852988 Length=3013 Score = 109 bits (120), Expect = 9e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| || || Sbjct 2148 TTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 2089 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| |||| |||| | ||||| || | ||||| || ||||| || || || || Sbjct 2088 CTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCC 2029 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || |||||||| || || ||||| || Sbjct 2028 TGTAAGGGTTTTTACGAAAATATGCATCTT 1999 >seq1799193 Length=4297 Score = 107 bits (118), Expect = 3e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||| | || ||||| || || || ||| |||| ||| || | |||||| Sbjct 2065 TCTTTTGAA-TGTTGTAGTCAGACAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAA 2007 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 |||| ||| |||||||||||||| |||||||| ||||| || || |||| |||| |||| Sbjct 2006 ATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTT 1947 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 | ||||| || | ||||| || ||||| || || || ||||| || |||||| Sbjct 1946 TCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATG 1887 Query 193350 AATATTTGCAT 193360 || || | ||| Sbjct 1886 AAAATCTACAT 1876 >seq1731777 Length=2471 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | || || Sbjct 720 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTCTTCC 779 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || |||||||| | ||| || ||||||||| | |||||||| | || || Sbjct 780 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTCATACTGG 839 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||||| |||| | || || || || | ||||| || ||||| || || || Sbjct 840 ATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGATGGTCTTC 899 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||||||||| || |||||||| Sbjct 900 CCCATAAGGGTTTTTACAAAAATCTGCATTTT 931 >seq3019692 Length=452 Score = 100 bits (110), Expect = 5e-16 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || |||||||| | ||| || ||||||||||| |||||||| || Sbjct 180 ATCTTCCAGTTGCTTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTTCCTT 239 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || |||| || | ||||| | ||||| || Sbjct 240 ATCCTGGATCTTGGCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAGTGAT 299 Query 193325 AG-TTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| ||||| || |||||||||| || ||||| || Sbjct 300 GGCCTTTCCCTGTAAGAATTTTTACAAAAATCTGCATCTT 339 >seq1585181 Length=9560 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| || ||| || ||||| | | | | || ||||||||||| ||| |||| || Sbjct 3441 ATCTTCTAGTTATTTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTT 3500 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA-CTCAACTTCTAGAGTTA 193323 |||||| || |||| |||| ||| | ||||| |||| ||| | | ||||| | Sbjct 3501 ATCTTGGATCTTGGCCTTTACATTGTCTTTTGTATC-CAAGAGTTCAGCCTTGAGAGTGA 3559 Query 193324 TAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||||| ||||| || ||||||| || || |||||||| Sbjct 3560 TGGTTTTCCCTGTAAGGGTTTTTATGAAAATCTGCATTTT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 863316177987600