Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1799193 104 4e-17 seq1731777 98.7 2e-15 seq1585181 86.0 1e-11 >seq1799193 Length=4297 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 ||||| | ||| | || || | ||| | ||| | || |||| || || || || |||| Sbjct 2103 ACCACGACGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGA-ATGTTGTAGTCAG 2045 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| || | ||| || | |||||| |||| ||| ||||||||||| | Sbjct 2044 ACAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAG 1985 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | ||| || | ||| | Sbjct 1984 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAA 1925 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| ||||| || || || | |||| || || |||| ||| Sbjct 1924 CCTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq1731777 Length=2471 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || || | ||| | ||| | ||| ||| || || || || ||||| || || | | | || Sbjct 717 AACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACATCCGTC 775 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 |||| ||| || |||||||| || | ||| || |||||||| | |||||||| | || Sbjct 776 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTCATA 835 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 || || || ||||||||| ||| | || || | ||| || || ||||| ||||| Sbjct 836 CTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGATGGT 895 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | | ||||| | ||| ||||||||||| Sbjct 896 CTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931 >seq1585181 Length=9560 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||||| | || |||| || | || ||| ||||||||| | | | | || Sbjct 3418 TTGTAGTCAGATAGAGAATGTCCATCTTCTAGTTATTTGCCAGCAAAGGTCAGTTTTTGC 3477 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 |||||||| || ||| |||| |||||||| || || |||||||| | | | ||| Sbjct 3478 TGATCAGGAGGAATTTCTTCCTTATCTTGGATCTTGGCCTTTACATTGTCTTTTGTATCC 3537 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | ||| | | ||||| |||||||| || || | ||||| || || ||||||||| Sbjct 3538 AAGAGTTCAGCCTTGAGAGTGATGGTTTTCCCTGTAAGGGTTTTTATGAAAATCTGCATT 3597 Query 192538 TT 192539 || Sbjct 3598 TT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944718631417800