Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2031399 127 4e-24 seq1799193 111 3e-19 seq1731777 104 4e-17 seq1852988 100 5e-16 seq1585181 87.8 3e-12 seq3019692 86.0 1e-11 seq1730184 86.0 1e-11 >seq2031399 Length=344 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 258 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 199 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || ||||||||||| | ||| || || Sbjct 198 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 139 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 138 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 79 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || ||||| || || || || || | ||||| | ||| |||||||| || Sbjct 78 GGGTTCGACCTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1799193 Length=4297 Score = 111 bits (122), Expect = 3e-19 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT-CTTTAGAAATAT 171891 |||| || ||||| | ||||| || || | ||| | ||| | || |||| ||| | | Sbjct 2112 TTTCTTAGCACCACGACGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAA-TGT 2054 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | || || || |||| || | || || | ||| || | ||||||||||| ||| |||| Sbjct 2053 TGTAGTCAGACAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTT 1994 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||||| || |||||||| ||||| || || || |||||||| | | ||||| | Sbjct 1993 GATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCG 1934 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | | ||| || || ||||| ||||| || || || | |||| ||||| |||| ||| Sbjct 1933 AGGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq1731777 Length=2471 Score = 104 bits (114), Expect = 4e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910 ||||| || || | ||| | ||| | ||| || ||| || || || || |||| | Sbjct 710 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 769 Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTC 171970 | |||| |||| ||| || ||||||||||| | ||| || || ||||| | |||||||| Sbjct 770 TCCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTC 829 Query 171971 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030 | || || || || ||||||||| ||| || || || | ||| || || ||||| Sbjct 830 CTCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGT 889 Query 172031 AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || | | ||||| | || ||||||||||| Sbjct 890 GATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931 >seq1852988 Length=3013 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| ||||| Sbjct 2153 TCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 2094 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || || || |||||||| | | |||||||| | ||| || || ||||| ||||| Sbjct 2093 TGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTC 2034 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || | ||||| | ||| || ||||| || Sbjct 2033 TTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999 >seq1585181 Length=9560 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| || || || || |||| ||| || | || || | || ||| || Sbjct 3399 AGTGGACTCTTTCTGAACTTTGTAGTCAGATAGAGAATGTCCATCTTCTAGTTATTTGCC 3458 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| | | | | || || ||||| || ||| |||| |||||||| || || || Sbjct 3459 AGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTATCTTGGATCTTGGCCTT 3518 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| | | ||||| | ||| | | ||||| |||||||| || || | || Sbjct 3519 TACATTGTCTTTTGTATCCAAGAGTTCAGCCTTGAGAGTGATGGTTTTCCCTGTAAGGGT 3578 Query 172052 TTTAATGAATATCTGCATTTT 172072 ||| ||||| ||||||||||| Sbjct 3579 TTTTATGAAAATCTGCATTTT 3599 >seq3019692 Length=452 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || | |||| | | | || |||| ||| || ||||||||||| | ||| Sbjct 153 AATGTTGTAGTCATACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAAATCACTCT 212 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || ||||| || |||||||| ||||| || || || |||||||| ||| | Sbjct 213 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTGTATTAT 272 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGG-TTTTACCAGTTAATGTTTTAATGAATATCT 172065 |||||| | ||| || | ||||| |||| ||| || || | |||| | || |||| Sbjct 273 ATCTGAGGGTTCAACCTTGAGAGTGATGGCCTTTCCCTGTAAGAATTTTTACAAAAATCT 332 Query 172066 GCATTTT 172072 |||| || Sbjct 333 GCATCTT 339 >seq1730184 Length=3170 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||| ||| || ||||||||||| | ||| || || ||| | || |||||||| ||||| Sbjct 1209 TCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATCC 1150 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 | || || |||||||| ||| ||||| | | ||| || | ||||| ||||| Sbjct 1149 AGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTAGAGAGTGATGGTC 1090 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | | ||||| ||||| |||||||| || Sbjct 1089 TTCCCCATAAGGGTTTTTATGAAAATCTGCATCTT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 868576368969000