Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 127 4e-24
seq1799193 111 3e-19
seq1731777 104 4e-17
seq1852988 100 5e-16
seq1585181 87.8 3e-12
seq3019692 86.0 1e-11
seq1730184 86.0 1e-11
>seq2031399
Length=344
Score = 127 bits (140), Expect = 4e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| ||
Sbjct 258 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 199
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || ||||||||||| | ||| || ||
Sbjct 198 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 139
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| ||||| ||
Sbjct 138 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 79
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || ||||| || || || || || | ||||| | ||| |||||||| ||
Sbjct 78 GGGTTCGACCTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1799193
Length=4297
Score = 111 bits (122), Expect = 3e-19
Identities = 169/238 (71%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT-CTTTAGAAATAT 171891
|||| || ||||| | ||||| || || | ||| | ||| | || |||| ||| | |
Sbjct 2112 TTTCTTAGCACCACGACGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAA-TGT 2054
Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951
| || || || |||| || | || || | ||| || | ||||||||||| ||| ||||
Sbjct 2053 TGTAGTCAGACAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTT 1994
Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011
| ||||| || |||||||| ||||| || || || |||||||| | | ||||| |
Sbjct 1993 GATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCG 1934
Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| | ||| || || ||||| ||||| || || || | |||| ||||| |||| |||
Sbjct 1933 AGGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876
>seq1731777
Length=2471
Score = 104 bits (114), Expect = 4e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910
||||| || || | ||| | ||| | ||| || ||| || || || || |||| |
Sbjct 710 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 769
Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTC 171970
| |||| |||| ||| || ||||||||||| | ||| || || ||||| | ||||||||
Sbjct 770 TCCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTC 829
Query 171971 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030
| || || || || ||||||||| ||| || || || | ||| || || |||||
Sbjct 830 CTCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGT 889
Query 172031 AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| || || | | ||||| | || |||||||||||
Sbjct 890 GATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931
>seq1852988
Length=3013
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977
|||| ||| || ||||||||||| | ||| || || ||||| || |||||||| |||||
Sbjct 2153 TCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 2094
Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037
|| || || |||||||| | | |||||||| | ||| || || ||||| |||||
Sbjct 2093 TGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTC 2034
Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || | ||||| | ||| || ||||| ||
Sbjct 2033 TTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999
>seq1585181
Length=9560
Score = 87.8 bits (96), Expect = 3e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931
||| | |||||| || || || || |||| ||| || | || || | || ||| ||
Sbjct 3399 AGTGGACTCTTTCTGAACTTTGTAGTCAGATAGAGAATGTCCATCTTCTAGTTATTTGCC 3458
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
|||||| | | | | || || ||||| || ||| |||| |||||||| || || ||
Sbjct 3459 AGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTATCTTGGATCTTGGCCTT 3518
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
|||||| | | ||||| | ||| | | ||||| |||||||| || || | ||
Sbjct 3519 TACATTGTCTTTTGTATCCAAGAGTTCAGCCTTGAGAGTGATGGTTTTCCCTGTAAGGGT 3578
Query 172052 TTTAATGAATATCTGCATTTT 172072
||| ||||| |||||||||||
Sbjct 3579 TTTTATGAAAATCTGCATTTT 3599
>seq3019692
Length=452
Score = 86.0 bits (94), Expect = 1e-11
Identities = 132/187 (71%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| || || || | |||| | | | || |||| ||| || ||||||||||| | |||
Sbjct 153 AATGTTGTAGTCATACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAAATCACTCT 212
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|| || ||||| || |||||||| ||||| || || || |||||||| ||| |
Sbjct 213 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTGTATTAT 272
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGG-TTTTACCAGTTAATGTTTTAATGAATATCT 172065
|||||| | ||| || | ||||| |||| ||| || || | |||| | || ||||
Sbjct 273 ATCTGAGGGTTCAACCTTGAGAGTGATGGCCTTTCCCTGTAAGAATTTTTACAAAAATCT 332
Query 172066 GCATTTT 172072
|||| ||
Sbjct 333 GCATCTT 339
>seq1730184
Length=3170
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977
|||| ||| || ||||||||||| | ||| || || ||| | || |||||||| |||||
Sbjct 1209 TCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATCC 1150
Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037
| || || |||||||| ||| ||||| | | ||| || | ||||| |||||
Sbjct 1149 AGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTAGAGAGTGATGGTC 1090
Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || | | ||||| ||||| |||||||| ||
Sbjct 1089 TTCCCCATAAGGGTTTTTATGAAAATCTGCATCTT 1055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 868576368969000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |