Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2560092 152 6e-31 seq1838203 140 4e-27 seq2819660 138 1e-26 seq1690259 134 2e-25 seq1790674 131 2e-24 seq1547184 131 2e-24 seq1712017 107 2e-17 seq2944646 95.1 1e-13 seq1748845 91.5 2e-12 seq1615235 87.8 2e-11 >seq2560092 Length=234 Score = 152 bits (168), Expect = 6e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| |||||| ||| | |||||||||||| |||||||||||||| | ||| | Sbjct 34 TGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCGCGGGACGTGATGG 93 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| || || | ||||||| |||| |||| Sbjct 94 TGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCTTCACCGGCGATGCGCTCGAAGATGT 153 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| ||||||||||||| ||| | ||| |||||||| ||| ||||| | Sbjct 154 CGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCGGTGTCCGGGTGGA 213 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 214 CCTGCTTCAGCACCTTGTA 232 >seq1838203 Length=1364 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||||||||| || |||||||||||||| | || Sbjct 1254 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACTGCCGTCTGGATCTCGCGGGACGTGA 1195 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| || ||| ||||||| |||| | Sbjct 1194 TAGTAGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCTTCGCCAGCGATGCGCTCGAAGA 1135 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| |||||||| ||| |||| Sbjct 1134 TGTCGTTGACGAATGAATTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 1075 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1074 GGACCTGCTTCAGCACCTTGTA 1053 >seq2819660 Length=285 Score = 138 bits (152), Expect = 1e-26 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||| |||||||||||||| | ||| | Sbjct 285 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCGCGGGACGTGATAG 226 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| || ||| | ||||||| || | |||| Sbjct 225 TGGAGCGCTTGTTGTAATGCGCCAGGCGGGATGCTTCGCCGGCGATGCGCTCAAAGATGT 166 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||||||||| ||||||| ||| | |||| || || || ||| ||||| | Sbjct 165 CGTTGACAAACGAATTCATGATGCCCATGGCCTTGGACGAAATACCGGTGTCCGGGTGGA 106 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 105 CCTGCTTCAGCACCTTGTA 87 >seq1690259 Length=2407 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| | | | || Sbjct 334 GCTTGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCTGGAGGTGA 275 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| ||||||| |||| | Sbjct 274 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCCGCGATGCGCTCGAAGA 215 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 214 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 155 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 154 GGACCTGCTTCAGCACCTTGTA 133 >seq1790674 Length=7858 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| | | | || Sbjct 5518 GCTTGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCTGGAGGTGA 5577 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| ||||||| |||| | Sbjct 5578 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCCCCCGCGATGCGCTCGAAAA 5637 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | ||| |||||||| |||||| | Sbjct 5638 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCGGTGTCGGGAT 5697 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 5698 GGACCTGCTTCAACACCTTGTA 5719 >seq1547184 Length=13421 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 8662 GCTTGGCCAGTTCTCCGGGCAACAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 8721 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| | ||||| |||| | Sbjct 8722 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCCCCCGCAATGCGCTCGAAAA 8781 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| || ||||| ||||| | Sbjct 8782 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCGGTATCGGGAT 8841 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 8842 GAACCTGCTTCAGCACCTTGTA 8863 >seq1712017 Length=2298 Score = 107 bits (118), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||| ||||||||||| | | | ||| | Sbjct 2298 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCTGGAGGTGATGG 2239 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | |||||||| || ||||| | ||||| || | || | Sbjct 2238 TCGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCCGCAATGCGCTCAAAGATAT 2179 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| ||||||||||||| ||| | |||| || ||||| ||| || || | Sbjct 2178 CGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCGGTGTCAGGATGGA 2119 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || |||||||| Sbjct 2118 CCTGCTTCAGTACCTTGTA 2100 >seq2944646 Length=1110 Score = 95.1 bits (104), Expect = 1e-13 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| | | || Sbjct 381 GCTTGGCCAGCTCTCCAGGAAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAAGTGA 440 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||| || ||||| | |||| || || | | Sbjct 441 TAGTCGAGCGCTTGTTGTAATGCGCCAACCGAGAAGCCTCACCGGCGATACGCTCAAAAA 500 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||| ||||| | ||| | ||| || || || |||||||| Sbjct 501 TATCGTTGACGAACGAATTCATAATTCCCATGGCCTTAGACGAAATACCGGTGTCGGGGT 560 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 561 GGACCTGCTTCAGCACCTTGTA 582 >seq1748845 Length=5337 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | |||||||| | |||| ||| || |||||| |||| ||||| Sbjct 2491 GCTGCAAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAAT 2432 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| || | || |||||||| ||||||||||| || ||||| Sbjct 2431 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAA 2382 >seq1615235 Length=3244 Score = 87.8 bits (96), Expect = 2e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 ||||||||||| ||||| | || |||||||| || || ||||| | ||| | | ||| Sbjct 288 ACCTCCTCGGCCGTCCAAAAGGAAGCCTCGGCTTTCTTATACATTTGCCAAATATCATGG 229 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 || |||||| |||| ||||||||||| |||||| || | || ||| ||||| Sbjct 228 TATTCGATAGGAAAGATGACAAAGCGGTGGGGGTTTTCTCTCAGCAGTGGTTC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5841963179498685