Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2031399 132 4e-26 seq1627958 132 4e-26 seq1537392 131 1e-25 seq1731777 111 1e-19 seq1852988 98.7 9e-16 seq1799193 98.7 9e-16 seq3019692 96.9 3e-15 seq1730184 91.5 1e-13 seq2677557 89.7 4e-13 seq1581579 89.7 4e-13 seq1638757 86.0 5e-12 seq2678603 84.2 2e-11 >seq2031399 Length=344 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || ||||| || ||||| || ||| || | Sbjct 21 GATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCCTC 80 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 81 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 140 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||| ||||| || || || ||||| ||| | | |||| || || || Sbjct 141 GCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 200 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 201 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 248 >seq1627958 Length=3316 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || | || || || ||||| || ||| Sbjct 93 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAG 152 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||| ||||| || || || ||||| Sbjct 153 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCA 212 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||||||||||||| ||| | | | |||| || || || Sbjct 213 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAA 272 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| | || || || || || |||||||| ||| | || | ||||| Sbjct 273 CATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGG 320 >seq1537392 Length=19804 Score = 131 bits (144), Expect = 1e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| ||||| ||| Sbjct 11859 GATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAA 11918 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || | |||||||||||||||| ||||| || | ||| ||||| Sbjct 11919 TGACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCA 11978 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA-AACATGTCAGATTATA 24881 || ||||||||||||| ||||||||| || | || | || | | | |||| || || | Sbjct 11979 GCAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGA-TGGACACACCCTGTCTGACTACA 12037 Query 24882 ACATTCAAAAGGAATCGACACTACACTTG 24910 |||| || || || || || || |||||| Sbjct 12038 ACATCCAGAAAGAGTCCACCCTGCACTTG 12066 >seq1731777 Length=2471 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || | || || || || || ||||| || ||| || | Sbjct 928 ATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 869 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| || ||| |||||| |||||||| | | |||||||| | ||| ||||| Sbjct 868 GACACAATATAAAATGTAAAAGCCAAGATCCAGTATGAGGAAGGAATTCTTCCTGATCAG 809 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||| ||||| || || || ||||| || | | |||| || || ||| Sbjct 808 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGGATGTACTTTGTCTGACTACAAC 749 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || || || | |||||| || Sbjct 748 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 713 >seq1852988 Length=3013 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | ||||| || || || || || || || ||||| || ||| || | Sbjct 2001 GATGCATATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAACCCTC 2060 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 2061 AGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2120 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||| ||||| || || || ||||| || || || | || || || Sbjct 2121 GCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATG-GATGTACTTT---GACTACAA 2176 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || || || | |||||| || Sbjct 2177 CATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 2213 >seq1799193 Length=4297 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| |||| || || |||| || || || || || || || || || || ||| || | Sbjct 1875 GATGTAGATTTTCATAAAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCTC 1934 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 1935 GGATACAAGAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 1994 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 |||| | | || ||||| | || || || || ||| || | || | ||| || || | Sbjct 1995 ACAAAGACTAATTTTTGCTTGCAAGCAACTAGAAGATG-GACATACTTTGTCTGACTACA 2053 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| | || || || || | |||||| || Sbjct 2054 ACATTCAAAAGAAGTCCACTCTTCATCTTGTGTTGAGA 2091 >seq3019692 Length=452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAA-CTATTACGCTCGAAGTAGAAGCCA 24761 ||||||||| ||| | |||| || || || ||| | || || ||| | || ||| || Sbjct 337 GATGCAGATTTTTGTAAAAATTCTTACAGGGAAAGGCCATCACTCTCAAGGTTGAACCCT 278 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || | | || ||| ||||| |||||||| || || |||||||| ||||| |||| Sbjct 277 CAGATATAATACAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATC 218 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | |||| ||||| || || || ||||| ||| | | ||| || || | Sbjct 217 AGCAAAGAGTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTATGACTACA 158 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGT 24914 ||||||||||||| || | || ||| | |||| Sbjct 157 ACATTCAAAAGGAGTCCAGTCTTCACCTTGTGT 125 >seq1730184 Length=3170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || | || || || || || ||| | || ||| || Sbjct 1057 GATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCACTCTCTAGGTTGAACCCTT 1116 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||||| || || |||||||| |||| ||||| Sbjct 1117 GGATACAATAGAAAATGTAAAGGCCAAGATCCTGGATAAGGAAGGAATTCCTCTTGATCA 1176 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||| ||||| || || || ||||| || || | |||| || || || Sbjct 1177 GCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATG-GACGCATTTGTCTGACTACAA 1235 Query 24883 CATTCAAAAG 24892 |||||||||| Sbjct 1236 CATTCAAAAG 1245 >seq2677557 Length=202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/158 (74%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 189 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 130 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| ||| | ||| ||||||||||| || || || || ||||| | Sbjct 129 TGACACCATCGAGAACGTCAAAGCCAAA-ATCCAAGACAAGGAGGGCAT-CCCCCCGACC 72 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | || || |||| ||||| || |||| |||||||||| Sbjct 71 AGCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGAT 34 >seq1581579 Length=3724 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||||||| |||| || ||| ||||||| || | |||||||||||| |||| Sbjct 2883 AAAGATCCAAGACAAGGAAGACATCCCTTCCGATCAGCAGGGGTTGATCTTTGCCAGGAA 2942 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||||| || | | | | |||| || || ||||| || || || | || || || Sbjct 2943 GTAGCTGGAACATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTTCACCCTGCA 3002 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 | |||| || | ||| | ||||| Sbjct 3003 CCTGGTCCTGAGCTTGAGGGGAGG 3026 >seq1638757 Length=5346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/214 (71%), Gaps = 16/214 (7%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || |||| || || || || |||| || || ||||| ||| |||| Sbjct 1339 GATGCAGATTTTCATAAAAATCCTTACAGGGAAGGCTATCACTCTTGAAGTTGAA-CCAC 1397 Query 24763 C----GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCG 24818 | || ||| ||||| ||||| |||| || || || |||||||| ||||| | Sbjct 1398 CCTCGGATACAAAAGAAAATGTAAAGGCCGAGATTCAGGATAAGGAAGGAATTCCTCCTG 1457 Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGAT 24877 | || ||||||||| || || | ||||| ||| | ||| || | ||| || Sbjct 1458 AG-----ACC---GATCTTTGCTGGCAAGAAACTGGAAGATCC-AGACACTTTGTCTGAC 1508 Query 24878 TATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||||||||| || || || || |||| Sbjct 1509 TATAACATTCAAAAGGAGTCCACTCTTCATCTTG 1542 >seq2678603 Length=214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||| | || || || || || || ||||| || ||| || | Sbjct 194 GATGCAGATTTTCATAAAAGCCCTTCTGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 135 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| || ||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 134 AGATACAATACAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 75 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || | ||||| || || || ||||| ||| || || | || |||| Sbjct 74 GCAAAGACTGGTTTTTGCTGGCAAGCAACTGGAAGATA-GACGTACTTT---GACCATAA 19 Query 24883 CATTCAAAAGGA 24894 |||||||||||| Sbjct 18 CATTCAAAAGGA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432183018288370