Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1627958 132 3e-26 seq1549142 111 1e-19 seq1581579 105 4e-18 seq2677557 102 5e-17 seq1537392 102 5e-17 seq2929101 100 2e-16 seq2031399 91.5 9e-14 seq377944 87.8 1e-12 >seq1627958 Length=3316 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| || | || ||||| ||| | |||| ||| |||| ||||| ||||| || Sbjct 320 CCTCCCCTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAC 261 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| ||||| || || ||||| ||||||| | ||||| || | || Sbjct 260 ACGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGG 201 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||||| || || || | ||| ||| ||||| Sbjct 200 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 143 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||| ||| || || |||||||| |||||||||||||| Sbjct 142 CTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq1549142 Length=19220 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | | || ||| ||||| ||| ||||| | || || | |||| Sbjct 14350 AGCACCAGGTGCAGGCTGGACTCTTTCTGGGTGTCGTAGTCTAAAAGAGTGTGGCCATCT 14409 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || ||||| | ||| |||| | || | |||||||||| Sbjct 14410 TCCAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGGATGCCCTCCTTGTTT 14469 Query 34886 TTTATTTTTTGTTTGACGGATGCT-ATCGAT-TCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| | |||||| || || | ||| ||| || |||||| |||| ||| |||| Sbjct 14470 TGGATTTTGTCTTTGAC--ATTCTCAATGATATCACTGAGCTCGACCTCAAGGGTGATGG 14527 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||||||||| Sbjct 14528 TCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 14561 >seq1581579 Length=3724 Score = 105 bits (116), Expect = 4e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| |||||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 3026 CCTCCCCTCAAGCTCAGGACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCAGAC 2967 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| ||| ||||| | ||| | ||| ||||||| | ||||| || || Sbjct 2966 AGGGTGCGCCCATGTTCCAGCTACTTCCTGGCAAAGATCAACCCCTGCTGATCGGAAGGG 2907 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | | |||||||| | || ||| ||||| | | | | ||| ||| ||| || Sbjct 2906 ATGTCTTCCTTGTCTTGGATCTTTGCCTTGACATTTCCAGTGGTGTCACTGGACTCAACC 2847 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 | | ||| ||| |||| || || | |||||| | ||||| Sbjct 2846 TTGAGGGTGATGATCTTGCCAGTCAAGGTCTTCAGGAAGAT 2806 >seq2677557 Length=202 Score = 102 bits (112), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||| ||||||| ||||| || || || | |||| ||||| | || || || || ||| Sbjct 2 TTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATC 61 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || | |||||||| | || | ||||||||||| | ||||| ||||||| | Sbjct 62 AGACACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCG 120 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| ||| ||| || || | ||| |||||||| || || |||||||| || ||| Sbjct 121 ATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAG 180 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 181 ATCTGCAT 188 >seq1537392 Length=19804 Score = 102 bits (112), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 || ||| | |||| ||| ||||| ||||| ||||| || ||| || | |||| | || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 || || || || ||||||| | ||||| || | | | || |||||||| | || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 34891 TTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 |||| |||| || || || | ||||||| ||| || || | ||| |||||||| Sbjct 11946 CTTTTCCATGAC--ATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTG 11889 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| |||||||||||||| Sbjct 11888 CCGGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2929101 Length=1797 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||| | ||| ||||| || || || || |||| |||| Sbjct 942 AGCACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCC 1001 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || | | || ||||| | |||||||| | || | ||||||||||| Sbjct 1002 TCCAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCT 1061 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | |||| |||||| || || || | ||| ||| || ||| |||| |||||||| Sbjct 1062 TGGGTTTTGACTTTGAC--ATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGG 1119 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 |||| ||||| |||||||| || || || Sbjct 1120 TCTTGCCCGTCAGGGTCTTCACCAATAT 1147 >seq2031399 Length=344 Score = 91.5 bits (100), Expect = 9e-14 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| |||||||| ||||| || | | || || Sbjct 236 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 177 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || || ||||||| |||||| || | || | || ||||| Sbjct 176 TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 117 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || ||||| || | || || Sbjct 116 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATA 57 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGG 34985 ||||| || || ||||| ||||| || |||||||| | |||| Sbjct 56 GTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTTGGTGG 14 >seq377944 Length=2484 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/106 (79%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 1701 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCT 1758 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 1759 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312866519327795