Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2031399 129 4e-25 seq1731777 111 1e-19 seq1852988 96.9 3e-15 seq1799193 91.5 1e-13 seq1798963 87.8 1e-12 seq3019692 82.4 6e-11 >seq2031399 Length=344 Score = 129 bits (142), Expect = 4e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 175 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 174 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || ||||| ||||| Sbjct 114 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 55 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || |||||||| || Sbjct 54 CTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1731777 Length=2471 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || | || Sbjct 716 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTC 775 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || |||| || || | | Sbjct 776 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTCATA 835 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| ||| || ||||| || |||| || || ||||| || || Sbjct 836 CTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGATGGT 895 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | |||||| ||||| ||||||||||| Sbjct 896 CTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931 >seq1852988 Length=3013 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||||| || || || || | || Sbjct 2210 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCA--AA--GTACATCCATT 2155 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 2154 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2095 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || || |||| || || ||||| || || Sbjct 2094 CTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 2035 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || || ||||| || Sbjct 2034 CTTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999 >seq1799193 Length=4297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||||| || || | | || | ||| Sbjct 2088 CAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 2029 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||| |||| | || | |||||| ||||| || ||||| || || || || Sbjct 2028 TTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 1969 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| ||||| || || || |||| || |||||||| || | Sbjct 1968 CTG-AATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 1910 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || | | |||| | || |||| ||| Sbjct 1909 TCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq1798963 Length=3269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 29581 AAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGT 29640 |||||||| ||||| |||||||||||||| || || | | || || | ||| Sbjct 1643 AAATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGGCAAAGTATATCCATATTACAGT 1702 Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 || ||||||||| | |||| |||||||||||| || | ||| | | || || || || Sbjct 1703 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGAAATTTCTTTCTTATCCTGGAA- 1761 Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 || ||| |||||| || | || |||| || |||||||| || || || || Sbjct 1762 --AGCCTTCACATTTTCTATTGTATTGGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCC 1819 Query 29761 GTTAAGGTTTTAACAAATATCTGCATTTT 29789 | | |||||| |||| |||||||| || Sbjct 1820 ATAAGGGTTTTTGCAAAAATCTGCATCTT 1848 >seq3019692 Length=452 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| |||| || ||||||||||| || || | || | ||| || ||||| Sbjct 133 TGAAGACTGGACTCCTTTTGAATGTTGTAGTCATACAAAGTACATCCATCTTCCAGTTGC 192 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 193 TTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 252 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG-TTTTGCCAGT 29762 || ||| ||| || | || || |||| || | ||||| || | ||| || || Sbjct 253 GCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAGTGATGGCCTTTCCCTGT 312 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||| ||||| |||||||| || Sbjct 313 AAGAATTTTTACAAAAATCTGCATCTT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 370048678639005