Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 129 4e-25
seq1731777 111 1e-19
seq1852988 96.9 3e-15
seq1799193 91.5 1e-13
seq1798963 87.8 1e-12
seq3019692 82.4 6e-11
>seq2031399
Length=344
Score = 129 bits (142), Expect = 4e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || || |||
Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 175
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 174 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || ||||| |||||
Sbjct 114 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 55
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||| ||
Sbjct 54 CTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1731777
Length=2471
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || | ||
Sbjct 716 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTC 775
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || |||| || || | |
Sbjct 776 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTCATA 835
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||| ||| ||| || ||||| || |||| || || ||||| || ||
Sbjct 836 CTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGATGGT 895
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || | | |||||| ||||| |||||||||||
Sbjct 896 CTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931
>seq1852988
Length=3013
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| | ||||||||||| || || || || | ||
Sbjct 2210 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCA--AA--GTACATCCATT 2155
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 2154 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2095
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| ||||| || || || |||| || || ||||| || ||
Sbjct 2094 CTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 2035
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || || ||||| ||
Sbjct 2034 CTTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999
>seq1799193
Length=4297
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| | ||||||||||| || || | | || | |||
Sbjct 2088 CAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 2029
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| |||| |||| | || | |||||| ||||| || ||||| || || || ||
Sbjct 2028 TTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 1969
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| ||||| || || || |||| || |||||||| || |
Sbjct 1968 CTG-AATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 1910
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || | | |||| | || |||| |||
Sbjct 1909 TCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876
>seq1798963
Length=3269
Score = 87.8 bits (96), Expect = 1e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 29581 AAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGT 29640
|||||||| ||||| |||||||||||||| || || | | || || | |||
Sbjct 1643 AAATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGGCAAAGTATATCCATATTACAGT 1702
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
|| ||||||||| | |||| |||||||||||| || | ||| | | || || || ||
Sbjct 1703 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGAAATTTCTTTCTTATCCTGGAA- 1761
Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
|| ||| |||||| || | || |||| || |||||||| || || || ||
Sbjct 1762 --AGCCTTCACATTTTCTATTGTATTGGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCC 1819
Query 29761 GTTAAGGTTTTAACAAATATCTGCATTTT 29789
| | |||||| |||| |||||||| ||
Sbjct 1820 ATAAGGGTTTTTGCAAAAATCTGCATCTT 1848
>seq3019692
Length=452
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/207 (69%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| |||| || ||||||||||| || || | || | ||| || |||||
Sbjct 133 TGAAGACTGGACTCCTTTTGAATGTTGTAGTCATACAAAGTACATCCATCTTCCAGTTGC 192
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
||||||||| | |||| |||||||||||| || ||||| || || || || || | ||
Sbjct 193 TTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 252
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG-TTTTGCCAGT 29762
|| ||| ||| || | || || |||| || | ||||| || | ||| || ||
Sbjct 253 GCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAGTGATGGCCTTTCCCTGT 312
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||| ||||| |||||||| ||
Sbjct 313 AAGAATTTTTACAAAAATCTGCATCTT 339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 370048678639005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |