Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1537392 123 2e-23 seq1627958 118 1e-21 seq2677557 113 4e-20 seq2447078 96.9 3e-15 seq2357151 96.9 3e-15 seq1715087 91.5 1e-13 seq2031399 84.2 2e-11 >seq1537392 Length=19804 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| || || ||| | | | || | | Sbjct 12065 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCA-TCTTTCAC 12007 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || | | |||||| || ||| |||||||||||||||| ||| Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||| | ||| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || || |||||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq1627958 Length=3316 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||||||||||| || ||||| || || ||| | | | || || || Sbjct 299 AAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCA-TCTTCCAG 241 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || | || |||||| || || ||||||||||||||||| ||| Sbjct 240 CTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGAT 181 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | ||||| ||||| ||||||| || || | ||||| || ||||| Sbjct 180 CTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTGCC 121 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 120 AGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2677557 Length=202 Score = 113 bits (124), Expect = 4e-20 Identities = 121/156 (78%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||| | ||||| || | || || | |||||||||||| |||||||| |||||| Sbjct 35 TCCTCCAGCCGTTTGCCTGCAAATATCAGACACTGCTGGTCGGG-GGGATGCCCTCCTTG 93 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | ||| | ||||| |||||||||| |||| ||||| Sbjct 94 TCTTGGAT-TTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGAT 152 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || ||||| |||||||| Sbjct 153 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 188 >seq2447078 Length=448 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || |||||| || || ||||||||||||||||| ||||||| ||||| | ||| | Sbjct 440 CCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGAT 381 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| ||||||| || || | ||||| ||| ||||| |||| ||||| || || || Sbjct 380 GGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGAT 321 Query 133655 CTGCAT 133660 |||||| Sbjct 320 CTGCAT 315 >seq2357151 Length=385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133540 GCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGT 133599 |||| || |||||||||||||||||||| ||||||| ||||| | ||||| |||| Sbjct 23 GCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGT 82 Query 133600 CGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 | ||||||| || || | ||||| || ||||| ||||| || || || || ||||||| Sbjct 83 CACTGGGCTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCA 142 Query 133660 T 133660 | Sbjct 143 T 143 >seq1715087 Length=7196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| ||| | || || |||||||||| Sbjct 7042 GGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGC 7100 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| ||||| ||||| || || |||||| || Sbjct 7101 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCTTCTTTATCCTGGATCTTGGCCT 7160 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 | | | ||| | ||||| |||||||||| || Sbjct 7161 TCACATTCTCGATGGTGTCACTGGGCTCCACCTC 7194 >seq2031399 Length=344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 218 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 160 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 159 AGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 100 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || || |||| |||| || || || || || || Sbjct 99 TACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCTGTAAGGGT 40 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||||||||| Sbjct 39 TTTTACGAAAATCTGCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463894799398200