Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1536785 233 2e-56 >seq1536785 Length=19290 Score = 233 bits (258), Expect = 2e-56 Identities = 245/322 (76%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| |||||||| | || Sbjct 10553 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTAAAGAGAC 10612 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| || |||| |||||| ||||| || || | || || ||| || Sbjct 10613 ACATGTAACACCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTTTGGA 10672 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | || |||||| || | ||||||||| ||||| || || Sbjct 10673 GTCCCAGCTGGGTGATGTTTATCCTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGC 10732 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| |||||| | ||||||||||| || | Sbjct 10733 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCACGTCACAA 10792 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || || || | | ||||| |||||||||||||| |||||||||||||||| | | Sbjct 10793 TCAAGACATCCTGGGAAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGTTTCT 10852 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 10853 CTCTTTCATCCTGGGTCACCAC 10874 Score = 143 bits (158), Expect = 3e-29 Identities = 168/224 (75%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| || || |||||||||| ||| | || | ||| |||||||||| Sbjct 7980 ACAGTTTGCCTGAAGTAGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCCT-- 8037 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 8038 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGAAGGATGCTGGTAACAGATGTGGTCCCA 8096 Query 171623 TTACGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | | | |||||||||||| || || ||||| || ||||| | Sbjct 8097 TTCGGGTG-AGACAGAATCTCAGTACTATTTTCAATCCCTGATCCACGGACCTTCCAGGA 8155 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || || || ||||| | ||||| ||||||||||| || |||| Sbjct 8156 GATCACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 8199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555068372328000