Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2031399 132 1e-25 seq1799193 111 4e-19 seq3019692 96.9 8e-15 seq1983535 86.0 1e-11 seq1715087 84.2 5e-11 >seq2031399 Length=344 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || |||||| | || || ||| || || ||| | ||| Sbjct 37 AAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAAT 96 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| || || Sbjct 97 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTT 156 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 157 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 216 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 217 ACTCTTCATCTTGTGTTGAGACTTCG 242 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 242 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 183 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || || || || | ||| ||| Sbjct 182 CGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 138 >seq1799193 Length=4297 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||| || ||||| || || |||||| | || || ||| || || ||| ||| Sbjct 1891 AAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGATACAAGAGAAAAT 1950 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||| || || ||||||||| || || |||||||| || || Sbjct 1951 GTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGACTAATTTTT 2010 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | ||||| | ||||||||| |||||| | || |||||| | || || |||| Sbjct 2011 GCTTGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGAAGTCC 2070 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 2071 ACTCTTCATCTTGTGTTGAGACTTCG 2096 >seq3019692 Length=452 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAA-CGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| |||| || ||||| ||| | |||||| | | || ||| || || Sbjct 333 CAGATTTTTGTAAAAATTCTTACAGGGAAAGGCCATCACTCTCAAGGTTGAACCCTCAGA 274 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | | || |||||| ||||| || || || ||||||||| || || || Sbjct 273 TATAATACAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCA 214 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || || || || ||||| ||||||||||| | |||||| || |||||| | Sbjct 213 AAGAGTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTATGACTACAACAT 154 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || ||||| | |||||||||||| | |||||||| Sbjct 153 TCAAAAGGAGTCCAGTCTTCACCTTGTGTCGAGACTTC 116 >seq1983535 Length=492 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| || || Sbjct 87 GTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTAATTTTT 146 Query 206305 --GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || || ||||| ||||||||||| | ||||| || |||||| | || || |||| Sbjct 147 TTGCTGGTAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAAAAGGAGT 202 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| |||||||||| Sbjct 203 GCACTCTTCATCTTGTGTTGAGACTTC 229 >seq1715087 Length=7196 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| || || ||| || || || ||||| || || ||| Sbjct 7155 AAGATCCAGGATAAAGAAGGGATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG 7096 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | || |||||| ||||||||||||| || || ||| Sbjct 7095 CAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTGCAC 7036 Query 206374 CTTGTT 206379 || ||| Sbjct 7035 CTGGTT 7030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1132892124416905