Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1725941 89.7 5e-13 seq1627958 87.8 2e-12 seq2031399 84.2 2e-11 >seq1725941 Length=6718 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || ||||| | |||||||||||||||||| ||| ||||| || ||||| ||||| ||| Sbjct 1663 ACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTC 1722 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||| || | |||||| |||||||||| || Sbjct 1723 CGATTACAGGAATCTTTGTAGAGCATGTATGG 1754 >seq1627958 Length=3316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 |||| ||| ||||| || | | | |||||||| | ||||||||||| || ||| || Sbjct 311 AAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGT 252 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| |||||||| |||| | |||| | | ||| ||||| || || |||||||| Sbjct 251 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCC 192 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || ||| || | | || | || || | ||||| ||||| | || Sbjct 191 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTG 132 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | || |||||||| || || | || |||||||| Sbjct 131 ATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2031399 Length=344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 215 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 156 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 155 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 96 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || |||||| Sbjct 95 TTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTT 36 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 35 ACGAAAATCTGCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457360248079800