Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1690259 161 1e-33 seq2560092 158 2e-32 seq1838203 158 2e-32 seq1547184 158 2e-32 seq1790674 149 9e-30 seq2819660 127 3e-23 seq1888768 114 2e-19 seq2944646 113 6e-19 seq1899669 109 8e-18 seq2060647 105 9e-17 seq1712017 100 4e-15 seq1653393 91.5 2e-12 seq1615235 86.0 9e-11 >seq1690259 Length=2407 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 133 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 186 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||||| |||| Sbjct 187 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCTCGC 246 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| |||||||| Sbjct 247 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGT 306 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 307 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 355 >seq2560092 Length=234 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| || ||| ||||| Sbjct 232 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCGTCTAAGGCCATG 179 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | || || ||| Sbjct 178 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCCCGC 119 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | |||||||||||||| ||||||||| Sbjct 118 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGCGAGATCCAGACAGCCGTGCGC 59 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| || ||||| || |||||||||| Sbjct 58 CTGCTGCTGCCCGGCGAGCTGGCCAAACATGCCGTGTCGGAGGGCACCA 10 >seq1838203 Length=1364 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| || |||| ||||| Sbjct 1053 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 1106 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| ||| || ||| Sbjct 1107 GGCATCATGAATTCATTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAAGCGTCCCGC 1166 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||||||||||| || |||||| Sbjct 1167 CTGGCGCATTACAACAAGCGCTCTACTATCACGTCCCGCGAGATCCAGACGGCAGTGCGC 1226 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 1227 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1275 >seq1547184 Length=13421 Score = 158 bits (174), Expect = 2e-32 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| ||| || |||| ||||| Sbjct 8863 TACAAGGTGCTGAAGCAGGTTCATCCCGATACCGG-----CATT-TCGTCCAAGGCCATG 8810 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||| | ||||| |||| Sbjct 8809 GGCATCATGAACTCGTTCGTCAACGACATTTTCGAGCGCATTGCGGGGGAGGCTTCTCGC 8750 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 8749 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 8690 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| |||||||||| ||||||||| ||||||||||| Sbjct 8689 CTGCTGTTGCCCGGAGAACTGGCCAAGCACGCCGTGTCCGAGGGCAC 8643 >seq1790674 Length=7858 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| || ||| |||| |||| || ||| ||||| Sbjct 5719 TACAAGGTGTTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCGTCTAAGGCCATG 5666 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||||| |||| Sbjct 5665 GGCATCATGAACTCGTTTGTCAACGACATTTTCGAGCGCATCGCGGGGGAGGCTTCTCGC 5606 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| |||||||| Sbjct 5605 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGT 5546 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| || || |||||||||| Sbjct 5545 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCTGTGTCGGAGGGCACCA 5497 >seq2819660 Length=285 Score = 127 bits (140), Expect = 3e-23 Identities = 151/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| | | ||| ||| ||||| Sbjct 87 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGGTATTTCGTCC------AAGGCCATG 140 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||||||||||||||| | || ||||||| | ||| || ||| Sbjct 141 GGCATCATGAATTCGTTTGTCAACGACATCTTTGAGCGCATCGCCGGCGAAGCATCCCGC 200 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | |||||||||||||| |||||||| Sbjct 201 CTGGCGCATTACAACAAGCGCTCCACTATCACGTCCCGCGAGATCCAGACGGCCGTGCGT 260 Query 725094 CTGATCATGCGCGGCGAACTGGCCA 725118 ||| | ||| ||| || ||||||| Sbjct 261 CTGCTGCTGCCCGGAGAGCTGGCCA 285 >seq1888768 Length=843 Score = 114 bits (126), Expect = 2e-19 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||| | ||||| || ||||||| |||| ||||||| | |||||||| |||||||| Sbjct 704 ATGGATTCGTTCGTTCACGACATCCTCGATCGCATCGCCCAGGAGGCCGGCCGCCTGGCC 645 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 |||| || | |||| || ||| | | | ||||||||||| |||||||||||||| Sbjct 644 CGCTACACCCGGCGCTCGACCATCACCTCCAGAGAGATCCAGACGGCCGTGCGCCTGATG 585 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| || | | || ||||||||| |||||||||| || Sbjct 584 CTGCCCGGGGACATCGGCAAGCACGCCGTGTCCGAGGGCAACA 542 >seq2944646 Length=1110 Score = 113 bits (124), Expect = 6e-19 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| | | || ||| ||||| Sbjct 582 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGTATTTCGTCT------AAGGCCATG 529 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || ||||| ||||| |||||||| || | || || |||| | ||||| ||| Sbjct 528 GGAATTATGAATTCGTTCGTCAACGATATTTTTGAGCGTATCGCCGGTGAGGCTTCTCGG 469 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | |||||||||| || ||| | | ||||||||||| ||||||||| Sbjct 468 TTGGCGCATTACAACAAGCGCTCGACTATCACTTCCAGGGAGATCCAGACGGCCGTGCGC 409 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | || || ||||||| ||||||||| || ||||| |||| Sbjct 408 CTGCTGCTTCCTGGAGAGCTGGCCAAGCACGCCGTGTCTGAGGGGACCA 360 >seq1899669 Length=2366 Score = 109 bits (120), Expect = 8e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||||||||| || || || | || ||||||| ||| Sbjct 677 AAGGCCATGGGTATCATGAACTCGTTTGTTAATGATATCTTTGAGCGCATCGCGGGTGAG 736 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||||||||| | |||||||||| || ||| | | | ||||||||||| Sbjct 737 GCTTCTCGCCTGGCGCATTACAACAAGCGCTCGACTATCACCTCCAGGGAGATCCAGACT 796 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| || | ||| || || |||||| ||||||||| || |||||||||| Sbjct 797 GCTGTTCGCTTGTTGTTGCCTGGAGAGTTGGCCAAGCACGCCGTGTCTGAGGGCACCA 854 >seq2060647 Length=217 Score = 105 bits (116), Expect = 9e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | |||||| | ||||| ||||||| Sbjct 217 GCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGC 158 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 157 GCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 107 >seq1712017 Length=2298 Score = 100 bits (110), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||| || || |||| ||| || |||| ||||| Sbjct 2100 TACAAGGTACTGAAGCAGGTCCATCCTGACACCGG-----CATT-TCGTCCAAGGCCATG 2153 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || | || ||||| | ||||| |||| Sbjct 2154 GGCATCATGAACTCGTTCGTCAACGATATCTTTGAGCGCATTGCGGGGGAGGCGTCTCGC 2213 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| |||||||| Sbjct 2214 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGT 2273 Query 725094 CTGATCATGCGCGGCGAACTGGCCA 725118 ||| | ||| ||| || ||||||| Sbjct 2274 CTGCTGCTGCCCGGAGAGCTGGCCA 2298 >seq1653393 Length=11938 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||||||||| || || || || ||| |||| || |||| || Sbjct 9381 ATCTACAAAGTGCTCAAGCAAGTTCATCCAGATAC---TGG--CATC-TCTTCCAAGGCC 9328 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || || | ||||| | || || |||| ||||| Sbjct 9327 ATGAGTATCATGAATTCCTTCGTTACTGACATTTTTGAACGTATCGCAGGAGAGGCGTCC 9268 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | | |||||| || || ||| | | | ||||||||||| |||||| Sbjct 9267 CGCTTGGCCCATTACAACAAACGGTCGACCATCACCTCCAGGGAGATCCAGACAGCCGTG 9208 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| || || ||||||| |||||| || ||||| ||||||| Sbjct 9207 CGTCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCGGTATCCGAAGGCACCA 9156 Score = 89.7 bits (98), Expect = 7e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCA 725080 |||||| | |||||||||| | |||||||||| || ||| | | | || ||||| Sbjct 2377 CGAGGCTTTTTGCCTGGCGCGTTACAACAAGCGCTCAACCATCACCTCCAGGGACATCCA 2436 Query 725081 GACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||||||||||| | |||| || ||||||||| |||||| || || |||||||| Sbjct 2437 GATGGCCGTGCGCCTGCTGCTGCGGGGGAAACTGGCCAAGCACGCTGTGTCTGAGGGCAC 2496 Query 725141 CA 725142 || Sbjct 2497 CA 2498 >seq1615235 Length=3244 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 || || |||||| | || ||||| ||||||||||| | || || ||| ||||| Sbjct 176 GAACCACTGCTGAGAGAAAACCCCCACCGCTTTGTCATCTTTCCTATCGAATACCATGAT 235 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| ||||||| | |||| ||||||| ||||||||||| ||||||||||| Sbjct 236 ATTTGGCAAATGTATAAGAAAG-CCGAGGCTTCCTTTTGGACGGCCGAGGAGGT 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6866145893611410