Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1557410 275 8e-69 seq1615235 138 1e-27 seq1700391 120 4e-22 seq1599774 105 9e-18 seq1725941 98.7 1e-15 seq1951121 87.8 2e-12 seq2307158 86.0 8e-12 >seq1557410 Length=8730 Score = 275 bits (304), Expect = 8e-69 Identities = 632/942 (67%), Gaps = 21/942 (2%) Strand=Plus/Plus Query 39267 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCC 39322 ||| |||| |||||| |||| || | |||| ||| ||| | | |||||| |||||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 39323 ATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 39382 || | || ||| || || | ||||| || || || || || ||||||| ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 39383 TTTTCCATGAAATCAAACGGATTAGTTGCATT---ATAtttttttttAAATCCTAATTCT 39439 || ||||| || ||||| ||||| || | | | | || | ||| || | ||| Sbjct 6597 TTCTCCATAAAGTCAAATGGATT--TTCTACTCGGAAAACCTTGCTGAAACCC-AGTTCC 6653 Query 39440 GAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT-CATTCC 39498 | | ||| ||||| ||||| || | ||| | ||| | ||||| ||| | Sbjct 6654 AGCCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGC 6713 Query 39499 TATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGT 39558 | | | || || | | ||||| || |||||||| | ||| || || || | | Sbjct 6714 AAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCT 6773 Query 39559 TATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618 ||||| | ||||| || || ||| || | | ||||| ||||| | ||| Sbjct 6774 AATTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCA 6833 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| ||||||||| ||| ||||||||||| ||| | | ||| | ||||||||||| || Sbjct 6834 GGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCC 6893 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 |||||| || || | || || ||||| ||||| | |||||| | |||||||||||||| Sbjct 6894 AGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGAT 6953 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTAT 39795 |||||| ||||| ||||| || |||| |||||||| | | || || | || Sbjct 6954 GCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAAT 7013 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| | | |||||| || ||| ||| ||||||||||| ||||| || ||||| || Sbjct 7014 CCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAA 7073 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 |||| | | |||| | | |||||||| || || || || || ||||||||||| | Sbjct 7074 GAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTT 7133 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 ||||| ||||||| | || || || || || || ||||| ||||| | || || Sbjct 7134 AGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTG-AACTTC 7192 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 | || |||||| || |||| || ||||| ||| | | ||||| || ||||| Sbjct 7193 T-----TGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAA 7246 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 || |||| ||| | || |||| | | | || || || | ||||| | Sbjct 7247 GAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTA 7306 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 || || || || | ||| || || || || |||||||| || | ||| || || || || Sbjct 7307 AATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATA 7366 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| ||| |||||| | |||| || || || || ||||| Sbjct 7367 CATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 138 bits (152), Expect = 1e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 39759 CAACAA 39764 | |||| Sbjct 2993 CTACAA 2988 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || || || ||||| | ||||| ||||| || || ||| | |||||| || Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTCTC 1254 Query 39997 CGCC 40000 | || Sbjct 1253 CACC 1250 >seq1700391 Length=5054 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 3359 ACCACTCTTTCCCC 3372 >seq1599774 Length=14829 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || | ||||| ||||| || || || ||||| || ||||| | || Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 6480 TTTCTTATACCAT 6468 >seq1725941 Length=6718 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || ||||| |||| | | | Sbjct 3047 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 3106 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || |||||||| || Sbjct 3107 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 3166 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 3167 TCCAGGTAGATAGC 3180 >seq1951121 Length=1534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||| | | Sbjct 1404 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAAGA 1463 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 1464 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1523 Query 70454 ATTCTA 70459 ||||| Sbjct 1524 GTTCTA 1529 >seq2307158 Length=1450 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || ||||| ||||| | |||||||| || || Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || || || | ||||| |||| | || | ||||||| Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 191 ATATGCTGTGGTCTTTC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 659163652000200