Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 275 8e-69
seq1615235 138 1e-27
seq1700391 120 4e-22
seq1599774 105 9e-18
seq1725941 98.7 1e-15
seq1951121 87.8 2e-12
seq2307158 86.0 8e-12
>seq1557410
Length=8730
Score = 275 bits (304), Expect = 8e-69
Identities = 632/942 (67%), Gaps = 21/942 (2%)
Strand=Plus/Plus
Query 39267 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCC 39322
||| |||| |||||| |||| || | |||| ||| ||| | | |||||| ||||||
Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536
Query 39323 ATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 39382
|| | || ||| || || | ||||| || || || || || ||||||| ||| |||
Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596
Query 39383 TTTTCCATGAAATCAAACGGATTAGTTGCATT---ATAtttttttttAAATCCTAATTCT 39439
|| ||||| || ||||| ||||| || | | | | || | ||| || | |||
Sbjct 6597 TTCTCCATAAAGTCAAATGGATT--TTCTACTCGGAAAACCTTGCTGAAACCC-AGTTCC 6653
Query 39440 GAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT-CATTCC 39498
| | ||| ||||| ||||| || | ||| | ||| | ||||| ||| |
Sbjct 6654 AGCCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGC 6713
Query 39499 TATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGT 39558
| | | || || | | ||||| || |||||||| | ||| || || || | |
Sbjct 6714 AAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCT 6773
Query 39559 TATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618
||||| | ||||| || || ||| || | | ||||| ||||| | |||
Sbjct 6774 AATTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCA 6833
Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678
||| ||||||||| ||| ||||||||||| ||| | | ||| | ||||||||||| ||
Sbjct 6834 GGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCC 6893
Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738
|||||| || || | || || ||||| ||||| | |||||| | ||||||||||||||
Sbjct 6894 AGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGAT 6953
Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTAT 39795
|||||| ||||| ||||| || |||| |||||||| | | || || | ||
Sbjct 6954 GCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAAT 7013
Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855
||| | | |||||| || ||| ||| ||||||||||| ||||| || ||||| ||
Sbjct 7014 CCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAA 7073
Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915
|||| | | |||| | | |||||||| || || || || || ||||||||||| |
Sbjct 7074 GAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTT 7133
Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975
||||| ||||||| | || || || || || || ||||| ||||| | || ||
Sbjct 7134 AGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTG-AACTTC 7192
Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035
| || |||||| || |||| || ||||| ||| | | ||||| || |||||
Sbjct 7193 T-----TGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAA 7246
Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095
|| |||| ||| | || |||| | | | || || || | ||||| |
Sbjct 7247 GAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTA 7306
Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155
|| || || || | ||| || || || || |||||||| || | ||| || || || ||
Sbjct 7307 AATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATA 7366
Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
||| ||| |||||| | |||| || || || || |||||
Sbjct 7367 CATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 138 bits (152), Expect = 1e-27
Identities = 106/126 (84%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 39759 CAACAA 39764
| ||||
Sbjct 2993 CTACAA 2988
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || || || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|| || || || || ||||| | ||||| ||||| || || ||| | |||||| ||
Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTCTC 1254
Query 39997 CGCC 40000
| ||
Sbjct 1253 CACC 1250
>seq1700391
Length=5054
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
||||| || || || | ||| || ||||| |||||||||||||| ||||| | ||| ||
Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 3359 ACCACTCTTTCCCC 3372
>seq1599774
Length=14829
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || | ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| ||||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 6480 TTTCTTATACCAT 6468
>seq1725941
Length=6718
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| |||||||||||||| | || ||||| |||| | | |
Sbjct 3047 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 3106
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| || ||||| | || || |||||||| ||
Sbjct 3107 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 3166
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 3167 TCCAGGTAGATAGC 3180
>seq1951121
Length=1534
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | ||| |||||||| ||||| || || || | || || || ||||| | |
Sbjct 1404 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAAGA 1463
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||||||||| || | ||||| | || || ||| |||| ||||| || |||||||
Sbjct 1464 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1523
Query 70454 ATTCTA 70459
|||||
Sbjct 1524 GTTCTA 1529
>seq2307158
Length=1450
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | |||||||| || ||||| ||||| | |||||||| || ||
Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||||||| || | || || || | ||||| |||| | || | |||||||
Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192
Query 70111 ATATGCTGAGGTCGTTC 70127
|||||||| |||| |||
Sbjct 191 ATATGCTGTGGTCTTTC 175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 659163652000200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |