Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 205 7e-48
seq394582 194 1e-44
seq1921304 118 8e-22
seq1615235 109 4e-19
>seq1557410
Length=8730
Score = 205 bits (226), Expect = 7e-48
Identities = 593/903 (66%), Gaps = 36/903 (4%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | || || ||| |||| ||||| || ||| |||||| || ||||| || |
Sbjct 7408 TTTGTCATCTTCCCTATTGAATACCATGATATTTGGTGAATGTATAAGAAAGCTGAGCCT 7349
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCAT 43817
|| |||||||| || || || || ||| | | || ||| ||||||| ||| ||
Sbjct 7348 TCCTTTTGGACGGCGGAGGAGGTGGATCTTTCCAAGGACATTTAGCAC--TGGGAAGCCC 7291
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
|| || | | | |||||| |||||| ||| |||| || ||||| || || |||
Sbjct 7290 AGAAGCCTGAGAAGAGACATTTCATATCTCGTGTTCTGGCTTTCTTTGCAGCAAGTGACA 7231
Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937
| | ||| ||||| || ||||| | |||| ||||||||| |||||||
Sbjct 7230 GCACAGTAAATGACAACTTGGTGGCGCATTTTGGCCAAGAAGTT-------CAGAAGCCT 7178
Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997
||||| ||||| || |||||||||| | |||| || ||||| | ||||| ||||||
Sbjct 7177 ACTGTTTCTATGGCTTCCAAATTGCCACAAAAAACATGCATTCTAAGATGTATAGTCTTT 7118
Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057
| || || || ||||| |||||| | || | | | | || ||||| || ||||
Sbjct 7117 TTATTGACACTTACATTAAAGATTCTAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAA 7058
Query 44058 CAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113
| | || || | || | || || || ||| || | ||||| | | |
Sbjct 7057 CGATGCCTTGTGTCTAGA-TGAAGGCGGATTGGACCTTGTGTTGGATTGGGGACAAAGAG 6999
Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173
| | | | ||||||| |||| || ||||| | ||||||||||| |||||||| ||
Sbjct 6998 GCTACCTACGGAGAACATGTTGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGT 6939
Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233
| ||||| | ||||| ||| |||||||| |||| |||||||||| | || |||||
Sbjct 6938 TTTTTTGCATCGATATTCTGGCTAAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCC 6879
Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293
|||| | | || | ||||| || |||| ||| || ||||| ||| || | | |
Sbjct 6878 TATGAACTTACTAGCAGAGATGAGGGTTTACGTTGTGACTTTGCCTGCCTGATGTTCAAA 6819
Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353
| || | | || || || | | ||| | | | ||| || || | || ||
Sbjct 6818 CACCTGGTACAC---AAACCATTAGAGCAGAGAGTAAAAGAAATAATTAGCAATGCTGTT 6762
Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA--TG 44411
| ||||||||| || ||| | || || || | || || | | ||||| ||
Sbjct 6761 AGGATAGAACAGGAGTTTCTCACTGAGGCCTTGCTGGTGAAGCACTTTGCGATGAAATTG 6702
Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTT---TTGGAACTGG 44468
| | || ||| | || || |||| | | ||||| | |||| |||||||||
Sbjct 6701 CA-TGTTAATGGAGCAGTACGTTGAGTTTGTGGCAGACAG---ACTTAGGCTGGAACTGG 6646
Query 44469 GTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524
||| | | || | || ||| |||| || ||||| |||||||| ||||||||
Sbjct 6645 GTT----TCAGCAAGGTTTTCCGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCA 6590
Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTC 44584
||||||| || || ||||| ||||| || | || || ||| |||| | ||||| ||
Sbjct 6589 CTGGAAGGAAAGACCAACTTCTTTGAGAAGAGAGTAGGCAAATGTCAGAGGATGGGAGTG 6530
Query 44585 ATG 44587
|||
Sbjct 6529 ATG 6527
>seq394582
Length=1925
Score = 194 bits (214), Expect = 1e-44
Identities = 291/411 (71%), Gaps = 2/411 (0%)
Strand=Plus/Minus
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT-GA 40921
|| ||||| || || ||| | ||||| ||||||| | | || ||||||||| | || ||
Sbjct 1111 GAGGGTGACCTGGGACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGA 1052
Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981
|| ||| |||| |||||| | |||| || || ||| |||| || || || ||
Sbjct 1051 GAC-ATGAACTCAGATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACAC 993
Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041
||| | | ||||| | | | | || |||||||| || ||||| || | |||| |
Sbjct 992 GATCAGAAAGAATCCCAGTGACAGGAGAATCATATTGTGTGCCTGGAATCCCAAGGACCT 933
Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101
||||||| |||| || ||||| || || ||||| || ||||| ||
Sbjct 932 TTCCCTGATGGCCCTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGA 873
Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161
|||||||||| | ||||| ||||| || |||||||| || ||||| || ||||| |
Sbjct 872 GTTGTCATGTCAGCTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGT 813
Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221
|| |||||| | ||||| || || |||||||||||| | || | |||||||| |||||
Sbjct 812 GGCTAGTTATTCACTGCTGACTTACATGATTGCACACCTAACAGACTTAAAACCGGGTGA 753
Query 41222 ATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272
||||| || || | ||||||| ||| ||||| | || |||||||||||
Sbjct 752 TTTTGTGCATACACTTGGAGATGCACACATTTATCTCAACCACATAGAGCC 702
>seq1921304
Length=364
Score = 118 bits (130), Expect = 8e-22
Identities = 188/270 (70%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 40935 GATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGAT 40994
|||||| | | ||||| | || ||| | || || || ||||| || ||| || |
Sbjct 81 GATTATTCGGGTCAAGGAGTTGACCAACTGCAAAAAGTGATTGATACCATCAAAACCAAC 140
Query 40995 CCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCA 41054
|| || | || | || || |||| || ||||| |||| || | | |||||||||
Sbjct 141 CCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGATCTTCCTTTGATGGCG 200
Query 41055 TTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAA 41114
|||| || |||||| | || ||||| ||||| |||||||| ||||| || ||
Sbjct 201 CTGCCTCCGTGTCATGCGCCCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAG 260
Query 41115 TTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT 41174
|||| || || || |||||||| || | || ||||| ||||| || || || ||
Sbjct 261 CTGTACCAGCTGTCGGGAGACATGGGCCTGAGCGTGCCGTTCAACATCGCCAGCTAGGCC 320
Query 41175 CTGCTCACGTATATGATTGCACACGTTACC 41204
||||||||||| ||||| |||||| | |||
Sbjct 321 CTGCTCACGTACATGATCGCACACATCACC 350
>seq1615235
Length=3244
Score = 109 bits (120), Expect = 4e-19
Identities = 91/109 (83%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 1266 CAAGAAGTTCAGATTA-CAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 1324
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 1325 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 1373
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| |||| || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 2978 GGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 3037
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 3038 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 3097
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 3098 ATTAGCAGAGATGA 3111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381803574736525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |