Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1557410 205 7e-48 seq394582 194 1e-44 seq1921304 118 8e-22 seq1615235 109 4e-19 >seq1557410 Length=8730 Score = 205 bits (226), Expect = 7e-48 Identities = 593/903 (66%), Gaps = 36/903 (4%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || ||| |||| ||||| || ||| |||||| || ||||| || | Sbjct 7408 TTTGTCATCTTCCCTATTGAATACCATGATATTTGGTGAATGTATAAGAAAGCTGAGCCT 7349 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCAT 43817 || |||||||| || || || || ||| | | || ||| ||||||| ||| || Sbjct 7348 TCCTTTTGGACGGCGGAGGAGGTGGATCTTTCCAAGGACATTTAGCAC--TGGGAAGCCC 7291 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || | | | |||||| |||||| ||| |||| || ||||| || || ||| Sbjct 7290 AGAAGCCTGAGAAGAGACATTTCATATCTCGTGTTCTGGCTTTCTTTGCAGCAAGTGACA 7231 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | | ||| ||||| || ||||| | |||| ||||||||| ||||||| Sbjct 7230 GCACAGTAAATGACAACTTGGTGGCGCATTTTGGCCAAGAAGTT-------CAGAAGCCT 7178 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 ||||| ||||| || |||||||||| | |||| || ||||| | ||||| |||||| Sbjct 7177 ACTGTTTCTATGGCTTCCAAATTGCCACAAAAAACATGCATTCTAAGATGTATAGTCTTT 7118 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 | || || || ||||| |||||| | || | | | | || ||||| || |||| Sbjct 7117 TTATTGACACTTACATTAAAGATTCTAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAA 7058 Query 44058 CAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 | | || || | || | || || || ||| || | ||||| | | | Sbjct 7057 CGATGCCTTGTGTCTAGA-TGAAGGCGGATTGGACCTTGTGTTGGATTGGGGACAAAGAG 6999 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||| |||| || ||||| | ||||||||||| |||||||| || Sbjct 6998 GCTACCTACGGAGAACATGTTGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGT 6939 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 | ||||| | ||||| ||| |||||||| |||| |||||||||| | || ||||| Sbjct 6938 TTTTTTGCATCGATATTCTGGCTAAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCC 6879 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 |||| | | || | ||||| || |||| ||| || ||||| ||| || | | | Sbjct 6878 TATGAACTTACTAGCAGAGATGAGGGTTTACGTTGTGACTTTGCCTGCCTGATGTTCAAA 6819 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | | || || || | | ||| | | | ||| || || | || || Sbjct 6818 CACCTGGTACAC---AAACCATTAGAGCAGAGAGTAAAAGAAATAATTAGCAATGCTGTT 6762 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA--TG 44411 | ||||||||| || ||| | || || || | || || | | ||||| || Sbjct 6761 AGGATAGAACAGGAGTTTCTCACTGAGGCCTTGCTGGTGAAGCACTTTGCGATGAAATTG 6702 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTT---TTGGAACTGG 44468 | | || ||| | || || |||| | | ||||| | |||| ||||||||| Sbjct 6701 CA-TGTTAATGGAGCAGTACGTTGAGTTTGTGGCAGACAG---ACTTAGGCTGGAACTGG 6646 Query 44469 GTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 ||| | | || | || ||| |||| || ||||| |||||||| |||||||| Sbjct 6645 GTT----TCAGCAAGGTTTTCCGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCA 6590 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTC 44584 ||||||| || || ||||| ||||| || | || || ||| |||| | ||||| || Sbjct 6589 CTGGAAGGAAAGACCAACTTCTTTGAGAAGAGAGTAGGCAAATGTCAGAGGATGGGAGTG 6530 Query 44585 ATG 44587 ||| Sbjct 6529 ATG 6527 >seq394582 Length=1925 Score = 194 bits (214), Expect = 1e-44 Identities = 291/411 (71%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT-GA 40921 || ||||| || || ||| | ||||| ||||||| | | || ||||||||| | || || Sbjct 1111 GAGGGTGACCTGGGACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGA 1052 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 || ||| |||| |||||| | |||| || || ||| |||| || || || || Sbjct 1051 GAC-ATGAACTCAGATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACAC 993 Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| | | ||||| | | | | || |||||||| || ||||| || | |||| | Sbjct 992 GATCAGAAAGAATCCCAGTGACAGGAGAATCATATTGTGTGCCTGGAATCCCAAGGACCT 933 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 ||||||| |||| || ||||| || || ||||| || ||||| || Sbjct 932 TTCCCTGATGGCCCTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGA 873 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 |||||||||| | ||||| ||||| || |||||||| || ||||| || ||||| | Sbjct 872 GTTGTCATGTCAGCTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGT 813 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221 || |||||| | ||||| || || |||||||||||| | || | |||||||| ||||| Sbjct 812 GGCTAGTTATTCACTGCTGACTTACATGATTGCACACCTAACAGACTTAAAACCGGGTGA 753 Query 41222 ATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 ||||| || || | ||||||| ||| ||||| | || ||||||||||| Sbjct 752 TTTTGTGCATACACTTGGAGATGCACACATTTATCTCAACCACATAGAGCC 702 >seq1921304 Length=364 Score = 118 bits (130), Expect = 8e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 40935 GATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGAT 40994 |||||| | | ||||| | || ||| | || || || ||||| || ||| || | Sbjct 81 GATTATTCGGGTCAAGGAGTTGACCAACTGCAAAAAGTGATTGATACCATCAAAACCAAC 140 Query 40995 CCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCA 41054 || || | || | || || |||| || ||||| |||| || | | ||||||||| Sbjct 141 CCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGATCTTCCTTTGATGGCG 200 Query 41055 TTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAA 41114 |||| || |||||| | || ||||| ||||| |||||||| ||||| || || Sbjct 201 CTGCCTCCGTGTCATGCGCCCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAG 260 Query 41115 TTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT 41174 |||| || || || |||||||| || | || ||||| ||||| || || || || Sbjct 261 CTGTACCAGCTGTCGGGAGACATGGGCCTGAGCGTGCCGTTCAACATCGCCAGCTAGGCC 320 Query 41175 CTGCTCACGTATATGATTGCACACGTTACC 41204 ||||||||||| ||||| |||||| | ||| Sbjct 321 CTGCTCACGTACATGATCGCACACATCACC 350 >seq1615235 Length=3244 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 1266 CAAGAAGTTCAGATTA-CAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 1324 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1325 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 1373 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 2978 GGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 3037 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 3038 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 3097 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 3098 ATTAGCAGAGATGA 3111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381803574736525