Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq394582 376 2e-99 seq1611918 244 8e-60 seq1921304 154 1e-32 seq1537755 136 3e-27 seq2840725 100 2e-16 seq365164 96.9 3e-15 seq1718482 87.8 1e-12 >seq394582 Length=1925 Score = 376 bits (416), Expect = 2e-99 Identities = 563/794 (71%), Gaps = 4/794 (1%) Strand=Plus/Plus Query 29734 TGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 29793 ||||||| ||| |||||| |||||| || | |||||||| | ||||||||| Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616 Query 29794 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853 |||||||| || | | || |||| || | |||||||| |||||||| || Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676 Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913 ||||| | |||| | || | || || | || | || || | ||| || ||||| Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736 Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973 || | || ||||| || ||||||| || | || | ||| || |||||||| || || Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796 Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 || || || || || | ||||| || ||||| || |||||||||||||| ||||| || Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGATA 856 Query 30034 GAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGG 30093 |||||||| || | |||||| | ||| ||||| || | || ||| || ||||| Sbjct 857 AAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAGG 916 Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153 || ||||| ||| | ||| ||||| |||||||| |||| ||||| | |||||| | Sbjct 917 CAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC-AC 975 Query 30154 TGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 |||| || || ||||| ||| | | ||||| || || || | ||| || || | Sbjct 976 TGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAAT 1035 Query 30213 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272 | |||| ||||||| |||| |||||||| || ||||||||||| || || || | | Sbjct 1036 AATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATAG 1095 Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332 |||||||||| ||||| || || ||| || ||||| ||||||||||| || | Sbjct 1096 GTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGAGC 1155 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392 | |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 1156 CATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCCCC 1215 Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30452 || ||||| || || ||||||| || || ||||||||| ||||| || |||| | Sbjct 1216 GAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAACA 1275 Query 30453 GGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512 || || ||||| | ||| ||||||| ||| || ||||| || || ||| | ||| Sbjct 1276 AAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGCCG 1334 Query 30513 -TGCCCGTCCTGTC 30525 ||| || ||||| Sbjct 1335 ACGCCTGTTCTGTC 1348 >seq1611918 Length=7152 Score = 244 bits (270), Expect = 8e-60 Identities = 429/623 (69%), Gaps = 24/623 (4%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 || || ||||| || || | || |||||| |||||| || || | || || | ||| Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 | || || ||||||| | || ||||| || || || | ||| || |||| |||||| Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 || | |||||||| |||||| || || | || || |||||||| Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 || ||| |||||| ||||| || || ||||| |||| ||| || ||||| || | | Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492 Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136 || ||||| | ||| || ||||| |||| ||| ||| | || ||||| || |||| | Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGG---AAGATCTGTTGGATTCCAAGCACACATG 3435 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| || | |||| | ||||| || | | ||||| || || || Sbjct 3434 ATGATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCA 3375 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || || || || |||| ||| || |||| ||||| || |||||||||||| Sbjct 3374 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCAC 3315 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 ||||| | | || || |||| ||| || ||| | ||| ||| ||| ||| Sbjct 3314 TGGAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCC 3255 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 | |||||||| ||| |||||||| |||||||| || || ||||| ||| || ||||| Sbjct 3254 AGAAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 3195 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 | |||||||| || |||| ||||||||| |||||||| || ||||||| || || Sbjct 3194 GCATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 3135 Query 30437 CTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| || || || ||||| Sbjct 3134 CATTTGGTTGTCAGCAGAGGAAA 3112 >seq1921304 Length=364 Score = 154 bits (170), Expect = 1e-32 Identities = 204/280 (73%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||| ||| || |||||||||||||| || | |||||||||||||| || || Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || | || |||||||| |||||| |||||| ||||| || || ||||| || | | Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTG 30118 ||||| ||||| || || || |||||||| || ||||| ||| ||| ||||| Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTTT 179 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 || ||||| || |||| |||||| | ||||| || |||||| | ||||| || | Sbjct 178 GGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATC 119 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | |||||||| || || || || ||||| || |||| Sbjct 118 ACTTTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79 >seq1537755 Length=8267 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || |||||||| || |||| |||||| ||||| || || ||||| |||| Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||| || ||||| || | ||| ||||||||||| || ||||| || Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756 >seq2840725 Length=252 Score = 100 bits (110), Expect = 2e-16 Identities = 176/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 110392 gggggATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451 || || || || || || |||||||| |||| || || || | | | ||||| |||| Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193 Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511 || || | ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133 Query 110512 ACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGG 110570 |||||||| || | |||| | ||| | || | | || || || | || || Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCCTGAG------CGG 80 Query 110571 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACC 110630 |||| ||||| || || || || ||||||||||||| | | || | || ||||| | Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20 Query 110631 GTTCAG--AATGA 110641 ||| || ||||| Sbjct 19 GTTTAGCAAATGA 7 >seq365164 Length=4430 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 3739 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTC 3680 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 3679 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCTTC 3620 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| || ||||| | |||||||| || Sbjct 3619 CCAGATTTTCACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 3572 >seq1718482 Length=5084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| | | ||||| |||||| || || Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390309274920060