Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq394582 376 2e-99
seq1611918 244 8e-60
seq1921304 154 1e-32
seq1537755 136 3e-27
seq2840725 100 2e-16
seq365164 96.9 3e-15
seq1718482 87.8 1e-12
>seq394582
Length=1925
Score = 376 bits (416), Expect = 2e-99
Identities = 563/794 (71%), Gaps = 4/794 (1%)
Strand=Plus/Plus
Query 29734 TGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 29793
||||||| ||| |||||| |||||| || | |||||||| | |||||||||
Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616
Query 29794 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853
|||||||| || | | || |||| || | |||||||| |||||||| ||
Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676
Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913
||||| | |||| | || | || || | || | || || | ||| || |||||
Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736
Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973
|| | || ||||| || ||||||| || | || | ||| || |||||||| || ||
Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796
Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033
|| || || || || | ||||| || ||||| || |||||||||||||| ||||| ||
Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGATA 856
Query 30034 GAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGG 30093
|||||||| || | |||||| | ||| ||||| || | || ||| || |||||
Sbjct 857 AAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAGG 916
Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153
|| ||||| ||| | ||| ||||| |||||||| |||| ||||| | |||||| |
Sbjct 917 CAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC-AC 975
Query 30154 TGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212
|||| || || ||||| ||| | | ||||| || || || | ||| || || |
Sbjct 976 TGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAAT 1035
Query 30213 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272
| |||| ||||||| |||| |||||||| || ||||||||||| || || || | |
Sbjct 1036 AATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATAG 1095
Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332
|||||||||| ||||| || || ||| || ||||| ||||||||||| || |
Sbjct 1096 GTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGAGC 1155
Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392
| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 1156 CATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCCCC 1215
Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30452
|| ||||| || || ||||||| || || ||||||||| ||||| || |||| |
Sbjct 1216 GAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAACA 1275
Query 30453 GGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512
|| || ||||| | ||| ||||||| ||| || ||||| || || ||| | |||
Sbjct 1276 AAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGCCG 1334
Query 30513 -TGCCCGTCCTGTC 30525
||| || |||||
Sbjct 1335 ACGCCTGTTCTGTC 1348
>seq1611918
Length=7152
Score = 244 bits (270), Expect = 8e-60
Identities = 429/623 (69%), Gaps = 24/623 (4%)
Strand=Plus/Minus
Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899
|| || ||||| || || | || |||||| |||||| || || | || || | |||
Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655
Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959
| || || ||||||| | || ||||| || || || | ||| || |||| ||||||
Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596
Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019
|| | |||||||| |||||| || || | || || ||||||||
Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551
Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079
|| ||| |||||| ||||| || || ||||| |||| ||| || ||||| || | |
Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492
Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136
|| ||||| | ||| || ||||| |||| ||| ||| | || ||||| || |||| |
Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGG---AAGATCTGTTGGATTCCAAGCACACATG 3435
Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196
||||| | ||||| || | |||| | ||||| || | | ||||| || || ||
Sbjct 3434 ATGATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCA 3375
Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256
|| || || || || |||| ||| || |||| ||||| || ||||||||||||
Sbjct 3374 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCAC 3315
Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316
||||| | | || || |||| ||| || ||| | ||| ||| ||| |||
Sbjct 3314 TGGAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCC 3255
Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376
| |||||||| ||| |||||||| |||||||| || || ||||| ||| || |||||
Sbjct 3254 AGAAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 3195
Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436
| |||||||| || |||| ||||||||| |||||||| || ||||||| || ||
Sbjct 3194 GCATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 3135
Query 30437 CTCTTGGTCGTGAGGAGGGGAAA 30459
| ||||| || || || |||||
Sbjct 3134 CATTTGGTTGTCAGCAGAGGAAA 3112
>seq1921304
Length=364
Score = 154 bits (170), Expect = 1e-32
Identities = 204/280 (73%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| ||||||| ||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| | || |||||||| |||||| |||||| ||||| || || ||||| || | |
Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTG 30118
||||| ||||| || || || |||||||| || ||||| ||| ||| |||||
Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTTT 179
Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178
|| ||||| || |||| |||||| | ||||| || |||||| | ||||| || |
Sbjct 178 GGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATC 119
Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218
| |||||||| || || || || ||||| || ||||
Sbjct 118 ACTTTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79
>seq1537755
Length=8267
Score = 136 bits (150), Expect = 3e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000
||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||
Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651
Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060
|| || || |||||||| || |||| |||||| ||||| || || ||||| ||||
Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711
Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||| || ||||| || | ||| ||||||||||| || ||||| ||
Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756
>seq2840725
Length=252
Score = 100 bits (110), Expect = 2e-16
Identities = 176/253 (70%), Gaps = 10/253 (4%)
Strand=Plus/Minus
Query 110392 gggggATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451
|| || || || || || |||||||| |||| || || || | | | ||||| ||||
Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193
Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511
|| || | ||||||||||||||||| ||||||| ||||||| ||||| || |||
Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133
Query 110512 ACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGG 110570
|||||||| || | |||| | ||| | || | | || || || | || ||
Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCCTGAG------CGG 80
Query 110571 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACC 110630
|||| ||||| || || || || ||||||||||||| | | || | || ||||| |
Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20
Query 110631 GTTCAG--AATGA 110641
||| || |||||
Sbjct 19 GTTTAGCAAATGA 7
>seq365164
Length=4430
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| ||||| || ||||||||||| ||||| || || || || |||| |||
Sbjct 3739 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTC 3680
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||| | ||| ||| ||| |||| |||||||| ||| || ||||| ||
Sbjct 3679 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCTTC 3620
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| || ||||| | |||||||| ||
Sbjct 3619 CCAGATTTTCACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 3572
>seq1718482
Length=5084
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || || || ||||| || || ||||| | | ||||| |||||| || ||
Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 390309274920060
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