Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1731777 86.0 4e-12 seq2929101 84.2 1e-11 >seq1731777 Length=2471 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||| | |||||| | ||| |||||| ||||||||||||||| || || || | || | Sbjct 710 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 769 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 ||||||| ||||| || || ||||| || | | || || || || | | ||| || Sbjct 770 TCCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTC 829 Query 34608 CTTGT-CTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 || | ||| |||||| ||||| | | |||||||| | || || || | | Sbjct 830 CTCATACTG-GATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAG 888 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || || || || | | ||||| |||||||||||||| ||||| Sbjct 889 TGATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTTGAT 934 >seq2929101 Length=1797 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||| | | ||||| || |||||| ||| | || ||||| ||||||||||| || || Sbjct 936 AGATGAAGCACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGG 995 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||| | | |||||| | | |||| ||||| || || | ||||||| Sbjct 996 CCATCCTCCAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCC 1055 Query 34609 TTGTCT 34614 |||||| Sbjct 1056 TTGTCT 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302335066914065