Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1537392 113 4e-20 seq2031399 98.7 8e-16 seq1731777 91.5 1e-13 >seq1537392 Length=19804 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || || || || || Sbjct 11860 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAAT 11919 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||| |||| || |||||||| |||||||| | || ||||| Sbjct 11920 GACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAG 11979 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| |||| || | || || ||||| || |||| | ||| | || || |||||| Sbjct 11980 CAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAAC 12039 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTG 27194 || || || ||||| ||| | || ||| Sbjct 12040 ATCCAGAAAGAGTCCACCCTGCACTTG 12066 >seq2031399 Length=344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || ||| |||| ||||| || || ||||| || Sbjct 22 ATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCCTCG 81 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || || ||||| || || || ||||| Sbjct 82 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 141 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 142 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 201 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 202 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 248 >seq1731777 Length=2471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || | || ||| | || ||||| || || ||||| || Sbjct 928 ATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 869 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || | | || ||| || || || | | ||||| || | || ||||| Sbjct 868 GACACAATATAAAATGTAAAAGCCAAGATCCAGTATGAGGAAGGAATTCTTCCTGATCAG 809 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| |||||||| | | || | || || |||||| Sbjct 808 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGGATGTACTTTGTCTGACTACAAC 749 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || | ||| | || ||| Sbjct 748 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417793722097865