Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2677557 93.3 3e-14 seq1549142 84.2 2e-11 >seq2677557 Length=202 Score = 93.3 bits (102), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 39103 ATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGC 39162 || || || |||| ||| || | | || || ||| ||||||| |||||||| |||| | Sbjct 8 ATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACAC 67 Query 39163 TGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTA 39222 |||||||||| ||| | || ||| ||||| |||||| ||||| || | | || Sbjct 68 TGCTGGTCGG-GGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTG 126 Query 39223 TCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 || || | |||||| || | ||||| | || || ||||| || || || ||||| ||| Sbjct 127 TCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGC 186 Query 39283 ATC 39285 ||| Sbjct 187 ATC 189 >seq1549142 Length=19220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || |||||||||||||||||||| |||| |||| |||| |||||| | || ||| || Sbjct 14407 TCTTCCAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGG-ATGCCCTCCTT 14465 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || |||||| | ||||| || | | |||| || ||| || || | ||||| Sbjct 14466 GTTTTGGATTTTGTCTTTGACATTCTCAATGATATCACTGAGCTCGACCTCAAGGGTGAT 14525 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || || || |||||||| ||||||| Sbjct 14526 GGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCATCT 14563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412629437201465