Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 118 7e-22
seq1731777 116 2e-21
seq1627958 102 5e-17
seq1852988 95.1 8e-15
seq1537392 89.7 3e-13
seq1730184 84.2 1e-11
seq3019692 82.4 5e-11
>seq2031399
Length=344
Score = 118 bits (130), Expect = 7e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| |||||||| || || || || ||||||||||| || || ||
Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||| || | |||| |||| || || || || ||||| | || || |||
Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| ||||| ||||||||||| | ||| ||||| || |||
Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| |||||||| | ||| | || || ||
Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 236
>seq1731777
Length=2471
Score = 116 bits (128), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||||||||| || |||||||| | ||| || || ||||||||||| ||||| ||
Sbjct 931 AAAATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAACCC 872
Query 23668 ACGGACACTGT-TGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAG 23725
||||||| | | |||| | ||| | || | | | | | | ||||| | | || |
Sbjct 871 TCGGACACAATATAAAATGTAAAAGCCAAGA--TCCAGTATGAGGAAGGAATTCTTCCTG 814
Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785
|||| || | | || ||||| ||||| ||||||||||||| | | ||||| || |
Sbjct 813 ATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGGATGTACTTTGTCTGACT 754
Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||||| ||||| |||||||| | ||| | || || ||
Sbjct 753 ACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 714
>seq1627958
Length=3316
Score = 102 bits (112), Expect = 5e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || | ||||| || ||||| || |||
Sbjct 94 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAGT 153
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | ||||| ||||| | || || |||||
Sbjct 154 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCCCCTGATCA 212
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| ||||| |||||||| | |||||| | || |||||
Sbjct 213 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAA 272
Query 23790 CATACAAAAAGAGTCCAC 23807
||| | |||||||||||
Sbjct 273 CATCTAGAAAGAGTCCAC 290
>seq1852988
Length=3013
Score = 95.1 bits (104), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| |||||||| |||||||| || || || || ||||||||||| ||||| ||
Sbjct 1999 AAGATGCATATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAACCC 2058
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||| |||| || || || || ||||| | || || |||
Sbjct 2059 TCAGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2118
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| ||||| ||||||||| | | | | ||||| || |||
Sbjct 2119 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATGGATGTACTTT----GACTAC 2174
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| | |||||| | ||| | || || ||
Sbjct 2175 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAG 2212
>seq1537392
Length=19804
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || ||||| ||||| || || |||
Sbjct 11860 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAAT 11919
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | | |||| || ||||| ||||| | | || |||||
Sbjct 11920 GACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAG 11979
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| |||| || ||||| || ||||| || |||| | || ||| | || ||||||
Sbjct 11980 CAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAAC 12039
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 12040 ATCCAGAAAGAGTCCAC 12056
>seq1730184
Length=3170
Score = 84.2 bits (92), Expect = 1e-11
Identities = 134/191 (70%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | |||||||| | ||| || || ||||||||| | ||||| ||
Sbjct 1055 AAGATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCACTCTCTAGGTTGAACCC 1114
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
||| || | |||| |||| || || || || ||||| | || | |||
Sbjct 1115 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCTGGATAAGGAAGGAATTCCTCTTGAT 1174
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| ||||| ||||||||| | | ||||| ||| || |||
Sbjct 1175 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATGGACGCA-TTTGTCTGACTAC 1233
Query 23788 AACATACAAAA 23798
||||| |||||
Sbjct 1234 AACATTCAAAA 1244
>seq3019692
Length=452
Score = 82.4 bits (90), Expect = 5e-11
Identities = 139/200 (70%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTC 23666
|| ||||||||||| || |||| || || |||||| | ||||||||| | ||||| |
Sbjct 339 AAGATGCAGATTTTTGTAAAAATTCTTACAGGGAAAGGCCATCACTCTCAAGGTTGAACC 280
Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| | || | | ||| |||| || || || || ||||| | || || ||
Sbjct 279 CTCAGATATAATACAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 220
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| || | | || ||||| ||||| ||||||||||| | | | ||||| || ||
Sbjct 219 TCAGCAAAGAGTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTATGACTA 160
Query 23787 CAACATACAAAAAGAGTCCA 23806
|||||| ||||| |||||||
Sbjct 159 CAACATTCAAAAGGAGTCCA 140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324698264902940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |