Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2031399 118 7e-22 seq1731777 116 2e-21 seq1627958 102 5e-17 seq1852988 95.1 8e-15 seq1537392 89.7 3e-13 seq1730184 84.2 1e-11 seq3019692 82.4 5e-11 >seq2031399 Length=344 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||||||||| || || || Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 236 >seq1731777 Length=2471 Score = 116 bits (128), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || |||||||| | ||| || || ||||||||||| ||||| || Sbjct 931 AAAATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAACCC 872 Query 23668 ACGGACACTGT-TGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAG 23725 ||||||| | | |||| | ||| | || | | | | | | ||||| | | || | Sbjct 871 TCGGACACAATATAAAATGTAAAAGCCAAGA--TCCAGTATGAGGAAGGAATTCTTCCTG 814 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 |||| || | | || ||||| ||||| ||||||||||||| | | ||||| || | Sbjct 813 ATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGGATGTACTTTGTCTGACT 754 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||||| ||||| |||||||| | ||| | || || || Sbjct 753 ACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 714 >seq1627958 Length=3316 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || | ||||| || ||||| || ||| Sbjct 94 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAGT 153 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| ||||| | || || ||||| Sbjct 154 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCCCCTGATCA 212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | |||||| | || ||||| Sbjct 213 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAA 272 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| | ||||||||||| Sbjct 273 CATCTAGAAAGAGTCCAC 290 >seq1852988 Length=3013 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| |||||||| || || || || ||||||||||| ||||| || Sbjct 1999 AAGATGCATATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAACCC 2058 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| |||| || || || || ||||| | || || ||| Sbjct 2059 TCAGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2118 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||| | | | | ||||| || ||| Sbjct 2119 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATGGATGTACTTT----GACTAC 2174 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| | |||||| | ||| | || || || Sbjct 2175 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAG 2212 >seq1537392 Length=19804 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 11860 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAAT 11919 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | | |||| || ||||| ||||| | | || ||||| Sbjct 11920 GACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAG 11979 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| |||| || ||||| || ||||| || |||| | || ||| | || |||||| Sbjct 11980 CAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAAC 12039 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 12040 ATCCAGAAAGAGTCCAC 12056 >seq1730184 Length=3170 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| | ||| || || ||||||||| | ||||| || Sbjct 1055 AAGATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCACTCTCTAGGTTGAACCC 1114 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| | || | ||| Sbjct 1115 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCTGGATAAGGAAGGAATTCCTCTTGAT 1174 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||| | | ||||| ||| || ||| Sbjct 1175 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAAATGGACGCA-TTTGTCTGACTAC 1233 Query 23788 AACATACAAAA 23798 ||||| ||||| Sbjct 1234 AACATTCAAAA 1244 >seq3019692 Length=452 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||||| || |||| || || |||||| | ||||||||| | ||||| | Sbjct 339 AAGATGCAGATTTTTGTAAAAATTCTTACAGGGAAAGGCCATCACTCTCAAGGTTGAACC 280 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | | || | | ||| |||| || || || || ||||| | || || || Sbjct 279 CTCAGATATAATACAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 220 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| ||||| ||||||||||| | | | ||||| || || Sbjct 219 TCAGCAAAGAGTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTATGACTA 160 Query 23787 CAACATACAAAAAGAGTCCA 23806 |||||| ||||| ||||||| Sbjct 159 CAACATTCAAAAGGAGTCCA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324698264902940