Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq394582 313 2e-80
seq1611918 223 3e-53
seq1921304 170 1e-37
seq1537755 156 3e-33
seq2840725 96.9 3e-15
seq1718482 87.8 1e-12
>seq394582
Length=1925
Score = 313 bits (346), Expect = 2e-80
Identities = 544/794 (69%), Gaps = 4/794 (1%)
Strand=Plus/Plus
Query 29506 TGCCATCCTCATCCTTATGGAGGGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGC 29565
||||||| ||| |||||| ||| || || | || ||||| | |||||||||
Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616
Query 29566 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29625
|||||||| || | | || |||| || | |||||||| |||||||| ||
Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676
Query 29626 CTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCC 29685
||||| | |||||| | | || || | ||||| || || | ||| ||||||||
Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736
Query 29686 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29745
|| || || ||||| || ||||||| || | || | ||| || |||||||| || ||
Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796
Query 29746 GAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTA 29805
|| || || || || | ||||| || ||||| || ||||||||||| || ||||| ||
Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGATA 856
Query 29806 GAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGG 29865
||||| || || | |||||| | ||| ||||| || | || || || |||||
Sbjct 857 AAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAGG 916
Query 29866 AAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTC 29925
|||||||| || | ||| ||||| ||||||||||||| ||||| | |||||| |
Sbjct 917 CAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC-AC 975
Query 29926 TGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 29984
|||| || || ||||| ||| | | ||||| || || || | ||| || || |
Sbjct 976 TGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAAT 1035
Query 29985 AGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCG 30044
| |||| | || ||||||||||| || || || | |
Sbjct 1036 AATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATAG 1095
Query 30045 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30104
|||||||||| ||||| || || ||| || ||||| ||||||||||| || |
Sbjct 1096 GTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGAGC 1155
Query 30105 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 30164
| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 1156 CATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCCCC 1215
Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30224
|| ||||| || || ||||||| || || ||||||||| ||||| || |||| |
Sbjct 1216 GAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAACA 1275
Query 30225 GGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCG 30284
|| || ||||| | ||| |||||| ||| || ||||| | || ||| | |||
Sbjct 1276 AAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGCCG 1334
Query 30285 -TGCCTGTCCTGTC 30297
|||||| |||||
Sbjct 1335 ACGCCTGTTCTGTC 1348
>seq1611918
Length=7152
Score = 223 bits (246), Expect = 3e-53
Identities = 416/620 (67%), Gaps = 18/620 (3%)
Strand=Plus/Minus
Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671
|| || ||||| || || | || ||||||| | |||| || || | ||| | |||
Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655
Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731
| || |||||||||| || || ||||| || || || | ||| || |||| ||||||
Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596
Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791
|| | |||||||| |||||| || |||| || || ||||||||
Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551
Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851
|||||| |||||| |||||||| || ||||| |||| ||| || ||||| || | |
Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492
Query 29852 GCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATG 29911
|||||||| | ||| || ||||| ||| | ||| | || ||||| ||||||| ||||
Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGGAAGATCTGTTGGATTCCAAGCACACATGATG 3432
Query 29912 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 29971
|| | ||||| || | |||| | ||||| || | | ||||| || || || ||
Sbjct 3431 ATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCAACT 3372
Query 29972 CCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGG 30031
|| || || || |||| | |||||||||||||||
Sbjct 3371 CCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGG 3312
Query 30032 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30091
|| | | || || |||| ||| || ||| | ||| ||| ||| |||| |
Sbjct 3311 AAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGA 3252
Query 30092 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30151
||||||| ||| |||||||| |||||||| || || ||||| || || ||||| |
Sbjct 3251 AAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCA 3192
Query 30152 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211
|||||||| || |||| ||||||||| |||||||| || ||||||| || || |
Sbjct 3191 TTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACACAT 3132
Query 30212 TTGGTCGTGAGGAGGGGAAA 30231
||||| || || || |||||
Sbjct 3131 TTGGTTGTCAGCAGAGGAAA 3112
>seq1921304
Length=364
Score = 170 bits (188), Expect = 1e-37
Identities = 204/277 (74%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| ||||||| ||| || |||||||||||||| || | |||||||||||||| || |||
Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| | || |||||||| || ||| |||||| |||||||| || ||||| || | |
Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGG 29893
||||| ||||| || ||||| |||||||| || ||||| | | | ||||| ||
Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGA 176
Query 29894 TTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 29953
||||| ||||||| |||||| | ||||| || |||||| | ||||| || | |
Sbjct 175 TTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATCACT 116
Query 29954 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990
|||||||| || || || || ||||| || ||||
Sbjct 115 TTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79
>seq1537755
Length=8267
Score = 156 bits (172), Expect = 3e-33
Identities = 134/166 (81%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772
||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||
Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651
Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832
||| || || |||||||| ||||||| |||||| |||||||| || ||||| ||||
Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711
Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||| || ||||| || | ||||||||||||||| || ||||| |||
Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAGA 5757
>seq2840725
Length=252
Score = 96.9 bits (106), Expect = 3e-15
Identities = 175/253 (69%), Gaps = 10/253 (4%)
Strand=Plus/Minus
Query 114275 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTC 114334
|| || || || || || |||||||| |||| || | || | | | ||||| ||||
Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193
Query 114335 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTG 114394
|| || | ||||||||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133
Query 114395 TCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGG 114453
| ||||| || | |||| | ||| | || | | || || || || | |||
Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT------CCTGAGCGG 80
Query 114454 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCTGCCACGATACC 114513
|||| ||||| || || || || ||||||||||||| | | || | || ||||| |
Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20
Query 114514 GTTCAG--AATGA 114524
||| || |||||
Sbjct 19 GTTTAGCAAATGA 7
>seq1718482
Length=5084
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || || || ||||| || | ||||| | | ||||| |||||| || ||
Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||||||
Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 390167871881230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |