Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq394582 313 2e-80 seq1611918 223 3e-53 seq1921304 170 1e-37 seq1537755 156 3e-33 seq2840725 96.9 3e-15 seq1718482 87.8 1e-12 >seq394582 Length=1925 Score = 313 bits (346), Expect = 2e-80 Identities = 544/794 (69%), Gaps = 4/794 (1%) Strand=Plus/Plus Query 29506 TGCCATCCTCATCCTTATGGAGGGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGC 29565 ||||||| ||| |||||| ||| || || | || ||||| | ||||||||| Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616 Query 29566 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29625 |||||||| || | | || |||| || | |||||||| |||||||| || Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676 Query 29626 CTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCC 29685 ||||| | |||||| | | || || | ||||| || || | ||| |||||||| Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736 Query 29686 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29745 || || || ||||| || ||||||| || | || | ||| || |||||||| || || Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796 Query 29746 GAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTA 29805 || || || || || | ||||| || ||||| || ||||||||||| || ||||| || Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGATA 856 Query 29806 GAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGG 29865 ||||| || || | |||||| | ||| ||||| || | || || || ||||| Sbjct 857 AAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAGG 916 Query 29866 AAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTC 29925 |||||||| || | ||| ||||| ||||||||||||| ||||| | |||||| | Sbjct 917 CAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC-AC 975 Query 29926 TGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 29984 |||| || || ||||| ||| | | ||||| || || || | ||| || || | Sbjct 976 TGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAAT 1035 Query 29985 AGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCG 30044 | |||| | || ||||||||||| || || || | | Sbjct 1036 AATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATAG 1095 Query 30045 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30104 |||||||||| ||||| || || ||| || ||||| ||||||||||| || | Sbjct 1096 GTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGAGC 1155 Query 30105 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 30164 | |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 1156 CATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCCCC 1215 Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30224 || ||||| || || ||||||| || || ||||||||| ||||| || |||| | Sbjct 1216 GAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAACA 1275 Query 30225 GGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCG 30284 || || ||||| | ||| |||||| ||| || ||||| | || ||| | ||| Sbjct 1276 AAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGCCG 1334 Query 30285 -TGCCTGTCCTGTC 30297 |||||| ||||| Sbjct 1335 ACGCCTGTTCTGTC 1348 >seq1611918 Length=7152 Score = 223 bits (246), Expect = 3e-53 Identities = 416/620 (67%), Gaps = 18/620 (3%) Strand=Plus/Minus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 || || ||||| || || | || ||||||| | |||| || || | ||| | ||| Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 | || |||||||||| || || ||||| || || || | ||| || |||| |||||| Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 || | |||||||| |||||| || |||| || || |||||||| Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851 |||||| |||||| |||||||| || ||||| |||| ||| || ||||| || | | Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492 Query 29852 GCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATG 29911 |||||||| | ||| || ||||| ||| | ||| | || ||||| ||||||| |||| Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGGAAGATCTGTTGGATTCCAAGCACACATGATG 3432 Query 29912 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 29971 || | ||||| || | |||| | ||||| || | | ||||| || || || || Sbjct 3431 ATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCAACT 3372 Query 29972 CCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGG 30031 || || || || |||| | ||||||||||||||| Sbjct 3371 CCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGG 3312 Query 30032 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30091 || | | || || |||| ||| || ||| | ||| ||| ||| |||| | Sbjct 3311 AAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGA 3252 Query 30092 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30151 ||||||| ||| |||||||| |||||||| || || ||||| || || ||||| | Sbjct 3251 AAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCA 3192 Query 30152 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211 |||||||| || |||| ||||||||| |||||||| || ||||||| || || | Sbjct 3191 TTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACACAT 3132 Query 30212 TTGGTCGTGAGGAGGGGAAA 30231 ||||| || || || ||||| Sbjct 3131 TTGGTTGTCAGCAGAGGAAA 3112 >seq1921304 Length=364 Score = 170 bits (188), Expect = 1e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||| ||| || |||||||||||||| || | |||||||||||||| || ||| Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || | || |||||||| || ||| |||||| |||||||| || ||||| || | | Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGG 29893 ||||| ||||| || ||||| |||||||| || ||||| | | | ||||| || Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGA 176 Query 29894 TTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 29953 ||||| ||||||| |||||| | ||||| || |||||| | ||||| || | | Sbjct 175 TTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATCACT 116 Query 29954 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 |||||||| || || || || ||||| || |||| Sbjct 115 TTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79 >seq1537755 Length=8267 Score = 156 bits (172), Expect = 3e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || |||||||| ||||||| |||||| |||||||| || ||||| |||| Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||| || ||||| || | ||||||||||||||| || ||||| ||| Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAGA 5757 >seq2840725 Length=252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 114275 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTC 114334 || || || || || || |||||||| |||| || | || | | | ||||| |||| Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193 Query 114335 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTG 114394 || || | ||||||||||||||||| ||||||| ||||||| ||||| |||||| Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133 Query 114395 TCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGG 114453 | ||||| || | |||| | ||| | || | | || || || || | ||| Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT------CCTGAGCGG 80 Query 114454 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCTGCCACGATACC 114513 |||| ||||| || || || || ||||||||||||| | | || | || ||||| | Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20 Query 114514 GTTCAG--AATGA 114524 ||| || ||||| Sbjct 19 GTTTAGCAAATGA 7 >seq1718482 Length=5084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || || || ||||| || | ||||| | | ||||| |||||| || || Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390167871881230