Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1557410 230 2e-55 seq3153753 104 2e-17 seq1615235 104 2e-17 seq1680276 96.9 3e-15 seq415604 96.9 3e-15 seq1808929 93.3 3e-14 seq1919022 89.7 4e-13 >seq1557410 Length=8730 Score = 230 bits (254), Expect = 2e-55 Identities = 463/678 (68%), Gaps = 19/678 (3%) Strand=Plus/Plus Query 4460 AAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT-CTTTAGATG 4518 |||||| |||||||| | || || | | ||||| ||||||| | | | || || ||| Sbjct 6744 AAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCTA-ATG 6802 Query 4519 GTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC 4578 |||| | ||| | || | |||| | || ||||| |||||| | ||||| || |||| Sbjct 6803 GTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTC 6862 Query 4579 TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA 4638 ||||| | ||||| | ||||| || | || ||||| | |||| || || ||||| | Sbjct 6863 TGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGA 6922 Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698 |||| | ||||| | ||||||||||| |||||||| || |||||||| ||||| | Sbjct 6923 ATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACAT 6982 Query 4699 GGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTC 4757 | ||| | | ||| ||||||| |||||| || | ||| | || || || Sbjct 6983 GTTCTCCGTAGGTAGC-CTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATC 7041 Query 4758 TTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCT 4814 | || || || || || | || || || || |||| |||| || | | ||| Sbjct 7042 TAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTA---GAATCT 7098 Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874 | ||| |||||||| || | || |||||||| | |||||| || |||| | | ||||| Sbjct 7099 TTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATT 7158 Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934 || || || || || || ||||| |||||||| | | ||| | || Sbjct 7159 TGGAAGCCATAGAAACAGTAGGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACC 7211 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT-AAA 4993 ||||| || |||||| | | |||||| |||||||| || |||| |||| ||||||| ||| Sbjct 7212 AAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAA 7271 Query 4994 GTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTC 5053 || ||| |||||||| | || |||||| | || || | | ||| || || Sbjct 7272 TGTCTCTTC-TCAGGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTC 7330 Query 5054 TTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTG 5113 || | |||||||| || | || ||||| || ||||| ||||||||||| | || | Sbjct 7331 CTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTC 7390 Query 5114 AATCGGAAGTATGACAAA 5131 ||| || | |||||||| Sbjct 7391 AATAGGGAAGATGACAAA 7408 >seq3153753 Length=347 Score = 104 bits (114), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 100 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 159 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| |||||| | | |||| Sbjct 160 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTATA 219 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| |||| |||| ||||||||||||| Sbjct 220 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 253 >seq1615235 Length=3244 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 1372 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 1313 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || || || || || | ||||||||| | |||||||| | | |||||| || Sbjct 1312 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTCTCC 1253 Query 4932 AC 4933 || Sbjct 1252 AC 1251 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992 Query 4692 AC 4693 || Sbjct 2991 AC 2990 >seq1680276 Length=4709 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTAC-GGACGAATAG 31823 |||||| || |||| || |||| || || | |||| || || || ||| || ||| Sbjct 2270 AGCGCTTGTGAAAATGGACATTCGGATAGCTCTTCCTTTTGGATGTTAATGGAAGAGTAG 2329 Query 31824 CTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883 || | | |||| ||||| | ||||||||||| || || || || ||||| |||| | Sbjct 2330 CTTCATGTTCTGCCTTGGCTGCAAAACACTTTATAGATGTAGGAGCTGGTGTCATAGTTG 2389 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAA 31933 ||| |||||||||| ||||| ||||| |||| |||||||| ||||| Sbjct 2390 AAGATGATAGAGGAAATGTTGGTGTTGTGCTGTTAAATTTTGGCAAAAAA 2439 >seq415604 Length=817 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || |||| || ||||| || || | ||||| ||||| || ||| || ||| || | Sbjct 108 GTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTGTTAGGGAAGAGCAGCACCATGT 167 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||||||||| || || || || | |||| | ||| ||| ||| Sbjct 168 TCTGGCTTGGCTGCAAAACACTTTATAGATGTAGGAGCTGCTGTTGTGGATGAAGATTAT 227 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||| ||| ||||| |||| | ||||||||||| |||||| | | || | ||| Sbjct 228 AGAGAAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAA 284 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || || ||| | | || || || ||||| ||| Sbjct 285 AAAGGTGATTGAATTGCACAGCTCATTTGTGAA 317 >seq1808929 Length=1881 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 666 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 610 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 609 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 550 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 549 ATAAGTCAAC 540 >seq1919022 Length=3229 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||||||||| |||| ||| ||||| |||||| Sbjct 3142 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTTCC 3083 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 3082 ATAAAATCAAAGGGATT 3066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410231733499565