Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 230 2e-55
seq3153753 104 2e-17
seq1615235 104 2e-17
seq1680276 96.9 3e-15
seq415604 96.9 3e-15
seq1808929 93.3 3e-14
seq1919022 89.7 4e-13
>seq1557410
Length=8730
Score = 230 bits (254), Expect = 2e-55
Identities = 463/678 (68%), Gaps = 19/678 (3%)
Strand=Plus/Plus
Query 4460 AAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT-CTTTAGATG 4518
|||||| |||||||| | || || | | ||||| ||||||| | | | || || |||
Sbjct 6744 AAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCTA-ATG 6802
Query 4519 GTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC 4578
|||| | ||| | || | |||| | || ||||| |||||| | ||||| || ||||
Sbjct 6803 GTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTC 6862
Query 4579 TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA 4638
||||| | ||||| | ||||| || | || ||||| | |||| || || ||||| |
Sbjct 6863 TGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGA 6922
Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698
|||| | ||||| | ||||||||||| |||||||| || |||||||| ||||| |
Sbjct 6923 ATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACAT 6982
Query 4699 GGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTC 4757
| ||| | | ||| ||||||| |||||| || | ||| | || || ||
Sbjct 6983 GTTCTCCGTAGGTAGC-CTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATC 7041
Query 4758 TTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCT 4814
| || || || || || | || || || || |||| |||| || | | |||
Sbjct 7042 TAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTA---GAATCT 7098
Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874
| ||| |||||||| || | || |||||||| | |||||| || |||| | | |||||
Sbjct 7099 TTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATT 7158
Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934
|| || || || || || ||||| |||||||| | | ||| | ||
Sbjct 7159 TGGAAGCCATAGAAACAGTAGGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACC 7211
Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT-AAA 4993
||||| || |||||| | | |||||| |||||||| || |||| |||| ||||||| |||
Sbjct 7212 AAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAA 7271
Query 4994 GTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTC 5053
|| ||| |||||||| | || |||||| | || || | | ||| || ||
Sbjct 7272 TGTCTCTTC-TCAGGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTC 7330
Query 5054 TTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTG 5113
|| | |||||||| || | || ||||| || ||||| ||||||||||| | || |
Sbjct 7331 CTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTC 7390
Query 5114 AATCGGAAGTATGACAAA 5131
||| || | ||||||||
Sbjct 7391 AATAGGGAAGATGACAAA 7408
>seq3153753
Length=347
Score = 104 bits (114), Expect = 2e-17
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832
||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | |
Sbjct 100 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 159
Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892
|||| ||||| | ||||||||||| || || || || ||||| |||||| | | ||||
Sbjct 160 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTATA 219
Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||||| |||| |||| |||||||||||||
Sbjct 220 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 253
>seq1615235
Length=3244
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 1372 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 1313
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| || || || || || || | ||||||||| | |||||||| | | |||||| ||
Sbjct 1312 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTCTCC 1253
Query 4932 AC 4933
||
Sbjct 1252 AC 1251
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| |||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992
Query 4692 AC 4693
||
Sbjct 2991 AC 2990
>seq1680276
Length=4709
Score = 96.9 bits (106), Expect = 3e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTAC-GGACGAATAG 31823
|||||| || |||| || |||| || || | |||| || || || ||| || |||
Sbjct 2270 AGCGCTTGTGAAAATGGACATTCGGATAGCTCTTCCTTTTGGATGTTAATGGAAGAGTAG 2329
Query 31824 CTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883
|| | | |||| ||||| | ||||||||||| || || || || ||||| |||| |
Sbjct 2330 CTTCATGTTCTGCCTTGGCTGCAAAACACTTTATAGATGTAGGAGCTGGTGTCATAGTTG 2389
Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAA 31933
||| |||||||||| ||||| ||||| |||| |||||||| |||||
Sbjct 2390 AAGATGATAGAGGAAATGTTGGTGTTGTGCTGTTAAATTTTGGCAAAAAA 2439
>seq415604
Length=817
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831
|| |||| || ||||| || || | ||||| ||||| || ||| || ||| || |
Sbjct 108 GTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTGTTAGGGAAGAGCAGCACCATGT 167
Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891
||||| ||||| | ||||||||||| || || || || | |||| | ||| ||| |||
Sbjct 168 TCTGGCTTGGCTGCAAAACACTTTATAGATGTAGGAGCTGCTGTTGTGGATGAAGATTAT 227
Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948
|||| ||| ||||| |||| | ||||||||||| |||||| | | || | |||
Sbjct 228 AGAGAAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAA 284
Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
|| || ||| | | || || || ||||| |||
Sbjct 285 AAAGGTGATTGAATTGCACAGCTCATTTGTGAA 317
>seq1808929
Length=1881
Score = 93.3 bits (102), Expect = 3e-14
Identities = 99/130 (76%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 666 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 610
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || |||||||| || | ||| || |
Sbjct 609 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 550
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 549 ATAAGTCAAC 540
>seq1919022
Length=3229
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
||||| || || ||||| || || |||||||||||||| |||| ||| ||||| ||||||
Sbjct 3142 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTTCC 3083
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 3082 ATAAAATCAAAGGGATT 3066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410231733499565
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |