Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq394582 381 4e-101 seq1611918 230 2e-55 seq1921304 152 4e-32 seq1537755 127 1e-24 seq365164 96.9 2e-15 >seq394582 Length=1925 Score = 381 bits (422), Expect = 4e-101 Identities = 564/794 (71%), Gaps = 4/794 (1%) Strand=Plus/Plus Query 27000 TGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 27059 ||||||| ||| |||||| |||||| || | |||||||| | ||||||||| Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616 Query 27060 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 27119 |||||||| || | | || |||| || | |||||||| |||||||| || Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676 Query 27120 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 27179 ||||| | |||| | || | || || | ||| | || || | ||| || ||||| Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736 Query 27180 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 27239 || || || ||||| || ||||||| || | || | ||| || |||||||| || || Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796 Query 27240 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 || || || || || | ||||| || ||||| || |||||||||||||| ||||| || Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGATA 856 Query 27300 GAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 |||||||| || | |||||||| || ||||| || || || ||| || ||||| Sbjct 857 AAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAGG 916 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 27419 || ||||| ||| | ||| ||||| |||||||| |||| ||||| | |||||| | Sbjct 917 CAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC-AC 975 Query 27420 TGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 27478 |||| || || ||||| ||| | | ||||| || || || | ||| || || | Sbjct 976 TGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAAT 1035 Query 27479 AGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCG 27538 | ||| ||||||| |||| |||||||| || |||||||| || || || || | | Sbjct 1036 AATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATAG 1095 Query 27539 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 27598 |||||||||| ||||| || || ||| || ||||| ||||||||||| || | Sbjct 1096 GTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGAGC 1155 Query 27599 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 27658 | |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 1156 CATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCCCC 1215 Query 27659 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 27718 || ||||| || || ||||||| || || ||||||||| ||||| || |||| | Sbjct 1216 GAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAACA 1275 Query 27719 GGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 27778 || || ||||| | ||| ||||||| ||| || ||||| || || ||| | ||| Sbjct 1276 AAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGCCG 1334 Query 27779 -TGCCCGTCCTGTC 27791 ||| || ||||| Sbjct 1335 ACGCCTGTTCTGTC 1348 >seq1611918 Length=7152 Score = 230 bits (254), Expect = 2e-55 Identities = 426/623 (68%), Gaps = 24/623 (4%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 || || ||||| || || | || |||||| |||||| || || | ||||| | ||| Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 | || || ||||||| || || ||||| || || || | ||| || |||| |||||| Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285 || | |||||||| |||||| || || | || || |||||||| Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551 Query 27286 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATG 27345 || ||| |||||| ||||| || || ||||| || | || || ||||| || | | Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492 Query 27346 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 27402 || ||||| | ||| || ||||| |||| ||| ||| | || ||||| || |||| | Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGG---AAGATCTGTTGGATTCCAAGCACACATG 3435 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462 ||||| | ||||| || | |||| | ||||| || | | ||||| || || || Sbjct 3434 ATGATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCA 3375 Query 27463 ACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 || || || || || ||| ||| || |||| ||||| || ||||||||||| Sbjct 3374 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCAC 3315 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 27582 ||||| | | || || |||| ||| || ||| | ||| ||| ||| ||| Sbjct 3314 TGGAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCC 3255 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 27642 | |||||||| ||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 3254 AGAAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 3195 Query 27643 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 27702 | |||||||| || |||| ||||||||| |||||||| || ||||||| || || Sbjct 3194 GCATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 3135 Query 27703 CTCTTGGTCGTGAGGAGGGGAAA 27725 | ||||| || || || ||||| Sbjct 3134 CATTTGGTTGTCAGCAGAGGAAA 3112 >seq1921304 Length=364 Score = 152 bits (168), Expect = 4e-32 Identities = 203/279 (73%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||| ||| || |||||||||||||| || | |||||||||||||| || || Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || | || |||||||| |||||| |||||| ||||| || || ||||| |||| Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTG 27384 ||||| ||||| || || || |||||||| || ||||| ||| ||| ||||| Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTTT 179 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 || ||||| || |||| |||||| | ||||| || |||||| | ||||| || | Sbjct 178 GGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATC 119 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | |||||||| || || || || ||||| || ||| Sbjct 118 ACTTTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCT 80 >seq1537755 Length=8267 Score = 127 bits (140), Expect = 1e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || |||||||| || |||| |||||| ||||| || || ||||| || | Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||||||||| || ||||| || Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756 >seq365164 Length=4430 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 3739 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTC 3680 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 3679 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCTTC 3620 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || || ||||| | |||||||| || Sbjct 3619 CCAGATTTTCACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 3572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354955441233455