Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1557410 309 4e-79 seq1615235 125 1e-23 seq2307158 111 2e-19 seq1769580 105 9e-18 seq1599774 105 9e-18 seq1725941 102 1e-16 seq3052344 93.3 6e-14 seq1005051 87.8 2e-12 >seq1557410 Length=8730 Score = 309 bits (342), Expect = 4e-79 Identities = 642/943 (68%), Gaps = 21/943 (2%) Strand=Plus/Plus Query 47790 GTTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 6476 GTTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 6535 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||| ||| || || | ||||| || || || || || ||||||| ||| || Sbjct 6536 CATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAAT 6595 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||||||||||| || | ||| || | || || | ||| Sbjct 6596 ATTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAG 6655 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTT-CA--CAATT-CATTC 48021 | ||||| ||||| || || || | || || || |||| || ||||| ||| Sbjct 6656 CCTAAGTCTGTCTGCCACAAACTCAACGTA-CTGCTC--CATTAACATGCAATTTCATCG 6712 Query 48022 CTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCA 48081 | | | || || | | ||||| || |||||||| ||||| || | ||||||| Sbjct 6713 CAAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGC 6772 Query 48082 CTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAAC 48141 ||||| | |||| | | ||| |||| | | || ||||| ||||| | | Sbjct 6773 TAATTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGC 6832 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | ||||| |||||| | | ||| |||||||| ||| | | ||| | ||||||||||| | Sbjct 6833 AGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGC 6892 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 | ||||| ||||| | ||| || ||||| ||||| | || ||| | ||||||||||| | Sbjct 6893 CAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGA 6952 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTA 48318 ||||||| || || ||||| || || |||||||| | || || |||| | Sbjct 6953 TGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAA 7012 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| | | |||||| |||||| ||| ||||||||||| ||||| || ||||| | Sbjct 7013 TCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGA 7072 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||||||| | |||| || |||||||| |||||| || || |||||||||||||| | Sbjct 7073 AGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCT 7132 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 || || || |||| | || || || || || || ||||| ||||| ||| || Sbjct 7133 TAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTC--TGAACT 7190 Query 48499 GTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 || | |||||| | | |||| || ||||||||| | | ||||| || |||| Sbjct 7191 ---TCT-TGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAA 7245 Query 48559 AAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCAT 48618 | || || | ||| | || |||| | | | | | || | | ||||| | Sbjct 7246 AGAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCT 7305 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 || || || || | ||| || || || || |||||||| || | ||| ||||| |||| Sbjct 7306 AAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTAT 7365 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||| ||| |||||| ||||| || ||||| || ||||| Sbjct 7366 ACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 2993 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| |||||| || || | |||||||||||||| || || || | Sbjct 1383 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 1324 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 1323 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 1269 >seq2307158 Length=1450 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || ||||| || ||||| ||||| | ||| | ||||||| Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 191 ATATGCTGTGGTCTTTCAGCC 171 >seq1769580 Length=2278 Score = 105 bits (116), Expect = 9e-18 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 1477 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 1418 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | |||||||| || || | ||||| || || ||||| || ||||||| ||| || Sbjct 1417 CATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 1358 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 1357 ATTCTCCATAAAGTCAAATGGATT 1334 >seq1599774 Length=14829 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 6480 TTTCTTATACCAT 6468 >seq1725941 Length=6718 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||| | || | ||| Sbjct 3047 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 3106 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || |||||||| || Sbjct 3107 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 3166 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 3167 TCCAGGTAGATAGC 3180 >seq3052344 Length=222 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||| ||| ||||| ||| ||| | | |||||||| |||| | | ||| ||||| Sbjct 21 TCCAGCGGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCCAAAACTTGAACTTCT 78 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || |||| | | || || || || || | |||||| | || Sbjct 79 TCTATTTCGGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTG 138 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 139 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 198 Query 46054 TCATCTATTACTCCCCCTCCCACA 46077 |||||||| || || |||| ||| Sbjct 199 TCATCTATGACACCAGCTCCTACA 222 >seq1005051 Length=233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 48335 ATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttC 48394 ||| ||||||||||| || ||||||| |||| || || | |||||||| | |||| Sbjct 4 ATCTGCCTTCTTCTTCACGCAAGGCAGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTC 63 Query 48395 ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTC 48454 ||| ||||||| | || || | ||| ||||||||| || || | || |||| Sbjct 64 TTTGAAATCTTTA----ATGTGTCCA-TAAGCAACTATACATCTCAGAAGGTATGTTTTA 118 Query 48455 AATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAA 48514 | || || || || || || ||||| |||||||| ||||| || || | || Sbjct 119 CGTGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAA 178 Query 48515 TCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 || || || | || ||||||||| | || ||||| || ||||| || || Sbjct 179 ACGCTCCACCCAGTTGTCATTTACTCTGCCGTCACTTGCTGCAAAGAAAGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666610215415200