Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 304 2e-77
seq1615235 120 4e-22
seq1700391 114 2e-20
seq1599774 109 8e-19
seq2307158 104 3e-17
seq3052344 84.2 3e-11
>seq1557410
Length=8730
Score = 304 bits (336), Expect = 2e-77
Identities = 635/940 (68%), Gaps = 17/940 (2%)
Strand=Plus/Plus
Query 46280 TTCTTTAA-AAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCC 46335
||| |||| ||||| |||| || | |||| ||| ||| | | |||||| ||||||
Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536
Query 46336 ATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 46395
|| | || ||| ||||| | ||||| || || || || || ||||||| ||| |||
Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596
Query 46396 TTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAA 46455
|| |||||||| ||||| ||||| || ||| || | || || | |||
Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC 6656
Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT-CATTCCTAT 46514
| ||||| ||||| || || || | ||| | ||| | ||||| ||| | |
Sbjct 6657 CTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAA 6716
Query 46515 GAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATAT 46574
| | || ||| | | ||||| || |||||||| ||||| || | ||||||| ||
Sbjct 6717 GTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAAT 6776
Query 46575 TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634
||| | ||||| | | ||| |||| || | || ||||| ||||| | || ||
Sbjct 6777 TATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGC 6836
Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694
||| |||||| | | || |||||||| ||| | | ||| | ||||||||||| |||||
Sbjct 6837 AAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGG 6896
Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754
||| ||||| | || || ||||| ||||| | || ||| | ||||||||||| |||||
Sbjct 6897 CATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCC 6956
Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCA 46811
||| || || || || || |||| |||||||| | || || || | ||||||
Sbjct 6957 TTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCA 7016
Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871
| | |||||| ||||| ||| ||||||||||| ||||| || ||||| |||||
Sbjct 7017 ACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076
Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931
||| | |||| | | |||||||| || || || || |||||||||||||| | ||
Sbjct 7077 AAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGA 7136
Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991
||| ||||||| | || || || || || || ||||| ||| |||| ||
Sbjct 7137 ATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCT-------TCTGAAC 7189
Query 46992 CTC-TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050
|| || |||||| | | ||| || ||||| ||| | | ||||| || ||||| |
Sbjct 7190 TTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGA 7248
Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110
| |||| ||| | || |||| | | | || | || | | ||||| | |
Sbjct 7249 AAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAA 7308
Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170
| || || || | ||| || || || || ||||| || || | ||| ||||| |||||||
Sbjct 7309 TGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 7368
Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
| ||| |||||| | |||| || || || || |||||
Sbjct 7369 TTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||||||||| |||||||| ||||| || || |||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| |||||||| || || || || ||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992
Query 46774 ACAA 46777
||||
Sbjct 2991 ACAA 2988
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || ||||| | ||||| |||||||| || |||
Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268
>seq1700391
Length=5054
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
||||||| || || || | ||| || ||||| ||||| |||||||| || || | ||| |
Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356
Query 46772 CGACAAGTCTCTCTCC 46787
|||| | ||| || ||
Sbjct 3357 CGACCACTCTTTCCCC 3372
>seq1599774
Length=14829
Score = 109 bits (120), Expect = 8e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || |||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 6480 TTTCTTATACCAT 6468
>seq2307158
Length=1450
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | |||||||| |||||||| ||||| | |||||||| || ||
Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||||||||| | || || || || || ||||| ||||||| || | |||||||
Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192
Query 77114 ATATGCTGAGGTCGTTC 77130
|||||||| |||| |||
Sbjct 191 ATATGCTGTGGTCTTTC 175
>seq3052344
Length=222
Score = 84.2 bits (92), Expect = 3e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470
||| ||||| |||| || |||||| | || |||| | | || || || || || | |||
Sbjct 69 TTGAACTTCTTCTATTTCGGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATCCGATC 128
Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530
|||| | || | || ||| | ||||| ||| ||| | || | || |||| || ||
Sbjct 129 ACCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 188
Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACA 44564
||||||||||||||||| || ||| |||| |||
Sbjct 189 TCTATAATCTTCATCTATGACACCAGCTCCTACA 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684138043857600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |