Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2031399 105 1e-17 seq1537392 102 2e-16 seq2929101 98.7 2e-15 seq2677557 93.3 9e-14 seq1731777 87.8 4e-12 seq1715087 86.0 1e-11 >seq2031399 Length=344 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 239 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 180 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || || || || || ||||| || | | ||||||||| Sbjct 179 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 120 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || || || || || ||||| Sbjct 119 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 60 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || || || ||||| | |||||| || Sbjct 59 ATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1537392 Length=19804 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || ||||||| | Sbjct 12066 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCA 12008 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 |||||| || ||||| | |||||||| || | ||| |||||||| ||||| | Sbjct 12007 CCTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGA 11948 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | |||| ||||| |||| | | |||| |||||| || || || || || |||| Sbjct 11947 TCTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGC 11888 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || |||||||| |||| |||||| Sbjct 11887 CGGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2929101 Length=1797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| ||||||| |||||||||||||| | | ||| | ||||| Sbjct 942 AGCACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCC 1001 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| | | || || || ||||||||| | | |||||| ||||| ||| Sbjct 1002 TCCAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCT 1061 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || |||| ||||||| |||| | | ||| ||| | || || ||||| || || | Sbjct 1062 TGGGTTTTGACTTTGACATTCTCGATGGTGTCACTGGA--CTTGACCTCAAGGGTTATGG 1119 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||||||| || |||||||| || Sbjct 1120 TCTTGCCCGTCAGGGTCTTCACCAA 1144 >seq2677557 Length=202 Score = 93.3 bits (102), Expect = 9e-14 Identities = 133/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 151923 ATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTC 151982 |||||||| |||| | ||| ||||| || || | ||| || || || || || | | Sbjct 8 ATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACAC 67 Query 151983 TGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTG 152042 |||||||| | | ||| || ||||| ||||| ||||| |||||| |||| | | || Sbjct 68 TGCTGGTCGGGGG-GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTG 126 Query 152043 TCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACC 152099 || ||| ||| || || || || || || ||||| || || ||||||||||||| | Sbjct 127 TC---ACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 183 Query 152100 TGCAT 152104 ||||| Sbjct 184 TGCAT 188 >seq1731777 Length=2471 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 770 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || || || || || || || || ||||| || | ||||||||| Sbjct 771 CCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCC 830 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 | | || || || ||| ||| | | || |||| || || || || ||||| Sbjct 831 TCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTG 890 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||| | || || || || || | ||||||||| Sbjct 891 ATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931 >seq1715087 Length=7196 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || |||||||| ||||||||||| || | | ||| Sbjct 7018 CCTCAGACGGAGAACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 7077 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 7078 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCC 7137 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||| || || || || || || ||| |||| | | |||| Sbjct 7138 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC 7179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106051355085655