Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 105 1e-17
seq1537392 102 2e-16
seq2929101 98.7 2e-15
seq2677557 93.3 9e-14
seq1731777 87.8 4e-12
seq1715087 86.0 1e-11
>seq2031399
Length=344
Score = 105 bits (116), Expect = 1e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 239 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 180
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || || || || || ||||| || | | |||||||||
Sbjct 179 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 120
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| | || || || || || |||||
Sbjct 119 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 60
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || || || || || ||||| | |||||| ||
Sbjct 59 ATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1537392
Length=19804
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || |||||||| ||||||||||| || | | || ||||||| |
Sbjct 12066 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCA 12008
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|||||| || ||||| | |||||||| || | ||| |||||||| ||||| |
Sbjct 12007 CCTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGA 11948
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| |||| ||||| |||| | | |||| |||||| || || || || || ||||
Sbjct 11947 TCTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGC 11888
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || |||||||| |||| ||||||
Sbjct 11887 CGGTCAGGGTCTTCACAAAGATCTGCAT 11860
>seq2929101
Length=1797
Score = 98.7 bits (108), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || ||||| ||||||| |||||||||||||| | | ||| | |||||
Sbjct 942 AGCACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCC 1001
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| | | || || || ||||||||| | | |||||| ||||| |||
Sbjct 1002 TCCAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCT 1061
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070
|| |||| ||||||| |||| | | ||| ||| | || || ||||| || || |
Sbjct 1062 TGGGTTTTGACTTTGACATTCTCGATGGTGTCACTGGA--CTTGACCTCAAGGGTTATGG 1119
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAA 152095
| |||||||| || |||||||| ||
Sbjct 1120 TCTTGCCCGTCAGGGTCTTCACCAA 1144
>seq2677557
Length=202
Score = 93.3 bits (102), Expect = 9e-14
Identities = 133/185 (72%), Gaps = 7/185 (4%)
Strand=Plus/Plus
Query 151923 ATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTC 151982
|||||||| |||| | ||| ||||| || || | ||| || || || || || | |
Sbjct 8 ATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACAC 67
Query 151983 TGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTG 152042
|||||||| | | ||| || ||||| ||||| ||||| |||||| |||| | | ||
Sbjct 68 TGCTGGTCGGGGG-GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTG 126
Query 152043 TCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACC 152099
|| ||| ||| || || || || || || ||||| || || ||||||||||||| |
Sbjct 127 TC---ACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 183
Query 152100 TGCAT 152104
|||||
Sbjct 184 TGCAT 188
>seq1731777
Length=2471
Score = 87.8 bits (96), Expect = 4e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 770
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| ||||| || || || || || || || || ||||| || | |||||||||
Sbjct 771 CCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCC 830
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
| | || || || ||| ||| | | || |||| || || || || |||||
Sbjct 831 TCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTG 890
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||| | || || || || || | |||||||||
Sbjct 891 ATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTT 931
>seq1715087
Length=7196
Score = 86.0 bits (94), Expect = 1e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||| || || || || || |||||||| ||||||||||| || | | |||
Sbjct 7018 CCTCAGACGGAGAACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 7077
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || || ||||| |||||||||||||| | | ||| ||
Sbjct 7078 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCC 7137
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
||| || || || || || || ||| |||| | | ||||
Sbjct 7138 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC 7179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1106051355085655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |