Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2031399 114 9e-21 seq1581579 114 9e-21 seq1627958 104 2e-17 seq1537392 100 2e-16 seq1852988 95.1 8e-15 seq1731777 91.5 1e-13 seq2929101 84.2 2e-11 seq2677557 82.4 5e-11 >seq2031399 Length=344 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 239 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 180 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||| |||| | |||||||| | ||| | |||||| Sbjct 179 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 120 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || ||| ||||| | || Sbjct 119 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 60 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || ||||| || ||||| || ||||| Sbjct 59 ATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 >seq1581579 Length=3724 Score = 114 bits (126), Expect = 9e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| |||| |||||||| || ||| ||| || ||||||||||| || | Sbjct 3026 CCTCCCCTCAAGCTCAGGACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCAGAC 2967 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | | ||||||| ||||| |||||||||||| | ||||||||| ||||| Sbjct 2966 AGGGTGCGCCCATGTTCCAGCTACTTCCTGGCAAAGATCAACCCCTGCTGATCGGAAGGG 2907 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||||| || ||||| ||| | |||| ||||||| ||| || ||| Sbjct 2906 ATGTCTTCCTTGTCTTGGATCTTTGCCTTGACATTTCCAGTGGTGTCACTGGACTCAACC 2847 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 | | || || |||| || || | |||||||| |||||| Sbjct 2846 TTGAGGGTGATGATCTTGCCAGTCAAGGTCTTCAGGAAGAT 2806 >seq1627958 Length=3316 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| || ||| ||| || | ||||||||| || | | ||| | || Sbjct 306 CAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATC 247 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||||||||||||||| | ||||||||| | || | |||||||| || Sbjct 246 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTC 187 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| | | ||| | |||||||| || || || || | || || | Sbjct 186 TTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGG 128 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||||||||| ||||| ||||| Sbjct 127 CCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq1537392 Length=19804 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 44131 CAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAG 44190 || ||| || ||| ||| || ||||||||||| || | || | | | || | || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250 ||| ||||| ||||||||||||| ||||||||| | | | | |||||||| || || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 44251 CTTCTGCTTCAATG---TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||| ||| ||| ||| | |||||||| || || ||||| | || || |||| Sbjct 11946 CTT----TTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCT 11891 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||||||||| ||||| ||||| Sbjct 11890 TGCCGGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq1852988 Length=3013 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| | ||||||| |||||||| || ||| | Sbjct 2215 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTC--AAAGT--ACAT 2160 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | | ||||| ||||| || ||||| |||| | |||||||| | ||| | |||||| Sbjct 2159 CCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 2100 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || || | || || | || ||| ||||| | || Sbjct 2099 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTG 2040 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || ||||| || ||||| || ||||| Sbjct 2039 ATGGTCTTCCCTGTAAGGGTTTTTACGAAAATATGCAT 2002 >seq1731777 Length=2471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | | Sbjct 711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 770 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| ||||| ||||| || ||||| |||| | |||||||| | | | | |||||| Sbjct 771 CCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCC 830 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 | | | ||||| || | || ||| ||||| | || ||| ||||| | || Sbjct 831 TCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTG 890 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | ||||| || || || || ||||| Sbjct 891 ATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCAT 928 >seq2929101 Length=1797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| ||| | |||||||||||||| | || ||| | || || Sbjct 944 CACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTC 1003 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| || | | ||| |||| | ||||||| || | || | || ||||| || | Sbjct 1004 CAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC--T 1061 Query 44248 TATCTTCTG-CTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 | || || ||| | ||| | |||||||| ||| | ||||| | || || ||| Sbjct 1062 TGGGTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGTC 1121 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATT 44332 || ||||| ||||||||||| || ||| Sbjct 1122 TTGCCCGTCAGGGTCTTCACCAATATT 1148 >seq2677557 Length=202 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/186 (72%), Gaps = 9/186 (5%) Strand=Plus/Plus Query 44156 ATGTTGTAATCGGC--GAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 |||||||| |||| |||| |||| | || |||||| | || || ||||| |||| | Sbjct 8 ATGTTGTAGTCGGAAAGAGTGTGGC---CATCCTCCAGCCGTTTGCCTGCAAATATCAGA 64 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 | |||||| || | || | || ||||| || || || |||| | |||| | || Sbjct 65 CACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTG-GCTTTGACGTTCTCGAT 122 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || |||||||| | || || ||||| || || ||||||||||||||||| Sbjct 123 GGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGAT 182 Query 44332 TTGCAT 44337 ||||| Sbjct 183 CTGCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345813427375185