Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1817971 170 3e-37 seq1995885 147 3e-30 seq1566104 127 3e-24 >seq1817971 Length=1863 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| | ||||| ||| |||||||||||| || ||||| || ||||||||||| Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||| | |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | ||| || ||| || || | || || |||| ||| | Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| ||||||| ||| || ||||| |||| Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 1389 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 298 >seq1995885 Length=2464 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || || |||| ||||||||||| | || | |||| ||| Sbjct 1435 AAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1376 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| ||||| ||||| ||||||||||| | || || ||||| Sbjct 1375 TTAAAACCTACTTCTCCACCGAAAGTGCTTGGCTTCCAGTAGTCAGGAGAACAGATAGTA 1316 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| ||||||| ||| Sbjct 1315 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1256 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | ||||| |||||||| |||| | | | |||||||||| ||| || | Sbjct 1255 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATA 1196 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || ||||| | || ||||| || ||||| ||||||| Sbjct 1195 TCACCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 1150 Score = 96.9 bits (106), Expect = 5e-15 Identities = 186/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | || || |||||||| ||||| ||||| || | |||||||| || || | Sbjct 377 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCC 318 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAAC-GTAGTCATACTTTGTTTTATCAATC 9060 | | ||| || ||||| |||| || ||| | || || || | | || || |||| Sbjct 317 AGTAATATAGAGTTGTTATAGAGAAACTGTTGATAGTTGT-ATTCCTGGTCTT--CAATT 261 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | ||| | ||||||| || | |||||||||||||| | |||| ||||| | | ||| Sbjct 260 TGAAAGGTGTCCGGCAGAAGGGGATGCCAGTGATACAGCGTGTTGAACTCAGCAGCAATA 201 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || |||||||||||||| | | ||| ||||| || || | |||| ||| | || Sbjct 200 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 142 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| || | ||||| || || Sbjct 141 GTGATAGCCACTCAAGTGCTGTACATA 115 >seq1566104 Length=2510 Score = 127 bits (140), Expect = 3e-24 Identities = 198/283 (70%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| |||| |||| ||||| || || | ||| || ||||||| || Sbjct 715 GGACAGGTCTTGGTGTTGAGGCAGACCAGCTTCTTCAGAGTGGCCGTCTTGACAATGTTA 774 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || |||| || || || || ||||| |||||||||||| | || || |||||| ||| Sbjct 775 AAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 834 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | ||| ||||||||||| || |||||||| | ||| | || ||||| || |||||| Sbjct 835 CCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 894 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||||| || || |||||| | | | || | | | | ||||| || |||| |||| Sbjct 895 GCGTTTGGTAGGCACTTTTCAAGAAGCAGCCCTGGGAAGAACTCCAAGGCATCGATGTCT 954 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || || || || |||||||| ||||||| Sbjct 955 CCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTCTCCTG 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687921205147200