Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1817971 170 3e-37
seq1995885 147 3e-30
seq1566104 127 3e-24
>seq1817971
Length=1863
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| | ||||| ||| |||||||||||| || ||||| || |||||||||||
Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||| | |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | ||| || ||| || || | || || |||| ||| |
Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| ||||||| ||| || ||||| ||||
Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 1389
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || || || || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| |||| | || | |||||| |||||||||||
Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 298
>seq1995885
Length=2464
Score = 147 bits (162), Expect = 3e-30
Identities = 204/286 (71%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||| || || || |||| ||||||||||| | || | |||| |||
Sbjct 1435 AAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1376
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| || || ||||| ||||| ||||| ||||||||||| | || || |||||
Sbjct 1375 TTAAAACCTACTTCTCCACCGAAAGTGCTTGGCTTCCAGTAGTCAGGAGAACAGATAGTA 1316
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | || | ||| ||||||| |||
Sbjct 1315 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1256
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
||||| | ||||| |||||||| |||| | | | |||||||||| ||| || |
Sbjct 1255 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATA 1196
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || || ||||| | || ||||| || ||||| |||||||
Sbjct 1195 TCACCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 1150
Score = 96.9 bits (106), Expect = 5e-15
Identities = 186/267 (70%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | || || |||||||| ||||| ||||| || | |||||||| || || |
Sbjct 377 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCC 318
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAAC-GTAGTCATACTTTGTTTTATCAATC 9060
| | ||| || ||||| |||| || ||| | || || || | | || || ||||
Sbjct 317 AGTAATATAGAGTTGTTATAGAGAAACTGTTGATAGTTGT-ATTCCTGGTCTT--CAATT 261
Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120
| ||| | ||||||| || | |||||||||||||| | |||| ||||| | | |||
Sbjct 260 TGAAAGGTGTCCGGCAGAAGGGGATGCCAGTGATACAGCGTGTTGAACTCAGCAGCAATA 201
Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179
|| |||||||||||||| | | ||| ||||| || || | |||| ||| | ||
Sbjct 200 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 142
Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206
|| ||||| || | ||||| || ||
Sbjct 141 GTGATAGCCACTCAAGTGCTGTACATA 115
>seq1566104
Length=2510
Score = 127 bits (140), Expect = 3e-24
Identities = 198/283 (70%), Gaps = 0/283 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||| |||| |||| ||||| || || | ||| || ||||||| ||
Sbjct 715 GGACAGGTCTTGGTGTTGAGGCAGACCAGCTTCTTCAGAGTGGCCGTCTTGACAATGTTA 774
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| |||| || || || || ||||| |||||||||||| | || || |||||| |||
Sbjct 775 AAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 834
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | ||| ||||||||||| || |||||||| | ||| | || ||||| || ||||||
Sbjct 835 CCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 894
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
||||| || || |||||| | | | || | | | | ||||| || |||| ||||
Sbjct 895 GCGTTTGGTAGGCACTTTTCAAGAAGCAGCCCTGGGAAGAACTCCAAGGCATCGATGTCT 954
Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || || || || || || || |||||||| |||||||
Sbjct 955 CCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTCTCCTG 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 687921205147200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |