Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1715087 125 2e-23 seq1537392 122 2e-22 seq2677557 120 7e-22 seq1799193 116 9e-21 seq2929101 114 3e-20 seq2447078 91.5 3e-13 seq2490240 89.7 1e-12 seq1292660 89.7 1e-12 seq2955825 87.8 4e-12 >seq1715087 Length=7196 Score = 125 bits (138), Expect = 2e-23 Identities = 129/167 (77%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 177966 GAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAG 178023 |||||||| || ||| ||||||||||||| || || ||||| ||||| ||||||| Sbjct 7194 GAGGTGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAG 7137 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 | ||||| || |||||||| | || ||||| || || || ||||| |||||||| | | Sbjct 7136 GGATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCA 7077 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| | || || ||| |||| ||||| ||||| ||||| || ||| Sbjct 7076 CTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTT 7030 >seq1537392 Length=19804 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 11863 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGT--AGAGCCCAATG 11920 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| |||| ||||||| || ||||| ||||| |||| ||| || |||| Sbjct 11921 ACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAGC 11980 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||| | |||||||| || || | || || ||| Sbjct 11981 AGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAACA 12040 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 12041 TCCAGAAAGAGTCCACCCTGCA-CTTG 12066 >seq2677557 Length=202 Score = 120 bits (132), Expect = 7e-22 Identities = 136/179 (76%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||||||||||||||| || ||| Sbjct 185 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 128 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||||||| || || || ||||| || || ||||| || ||||||| Sbjct 127 ACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCC-CCCGACCAGC 69 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | | || || || || || |||| ||| || ||||| |||||| |||| || ||| Sbjct 68 AGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAAC 10 >seq1799193 Length=4297 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||||| | |||| || ||||| || || ||||| || ||||| ||| ||| || || Sbjct 1882 ATTTTCATAAAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGATACA 1941 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 | || || || || ||||||||||| || |||||||| ||||| || || ||| || Sbjct 1942 AGAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGA 2001 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || || || || | || || || ||||||||| ||| | | || || ||| | ||| Sbjct 2002 CTAATTTTTGCTTGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTACAACATTCAA 2061 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || | || || || |||||||| |||||||| Sbjct 2062 AAGAAGTCCACTCTTCATCTTGTGTTGAGACT 2093 >seq2929101 Length=1797 Score = 114 bits (126), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 177926 AATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--AC 177983 ||| || ||||| || || || || || || || ||||| ||||| ||| ||| || Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTC--AAGTCCAGTGAC 1091 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || | || ||||| || |||||||| || |||||||| Sbjct 1090 ACCATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAG 1031 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || | | |||||||| || ||||| | |||||| | ||||| ||| || Sbjct 1030 CATCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATC 971 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||| || || ||||| || || Sbjct 970 CAGGAAGAGTCCACTCTGCACCTGGT 945 >seq2447078 Length=448 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| ||||| || || ||| Sbjct 318 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 375 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| || ||||| ||||| ||||| || || |||| Sbjct 376 ACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCAGC 435 Query 178042 A 178042 | Sbjct 436 A 436 >seq2490240 Length=640 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/126 (77%), Gaps = 7/126 (6%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||| | |||| Sbjct 520 AGGTGAAAATGC---AAATCTTCGTGAAGACCCTGACTGGGAAGACTATCACCTTGGAGG 576 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| |||||||| || Sbjct 577 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGGAT 634 Query 178028 CCCTCC 178033 ||| || Sbjct 635 CCCCCC 640 >seq1292660 Length=282 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGAACGTCAAACAA 178004 ||| || || |||||||||||||| |||| || ||||||| ||||| ||||| Sbjct 282 AGGCAAGACCATCACCCTCGAGGT--CAAGCCCAGTGACACCACTGAGAATGTCAAGGCC 225 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| | ||| || || ||||| | ||||| || | || || || || || ||| Sbjct 224 AAAATTCAAGCCAAGGAGGGCATCCCACTTGACCAACAGTGTCTGATATTTGCAGGCAAA 165 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | ||||| | || | ||| |||| ||||| || | ||||| Sbjct 164 CAGCTGGAGGATGGCCGCACTCTCTCAGACTGCAACATCCAGAAAGAGTCCATCCTGCAC 105 Query 178125 CT 178126 || Sbjct 104 CT 103 >seq2955825 Length=1785 Score = 87.8 bits (96), Expect = 4e-12 Identities = 121/166 (73%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 177960 ACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACA 178017 ||||| ||||| |||| ||| ||| ||| |||||||||||| || || || | || Sbjct 1 ACCCTTGAGGTC--AAGCCCAGTGACAGCATGGAGAACGTCAAAGCCAAAATCCAAGGCA 58 Query 178018 AAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | || || ||||| || ||||||| || || || || || || |||||||| || |||| Sbjct 59 AGGAGGGCATCCCACCTCACCAGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATG 118 Query 178078 GAAGGACTC-TTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | | |||| | | || || ||| |||| ||||| || || |||| Sbjct 119 GCTGCACTCGTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGC 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153895409858170