Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2660 562 2e-155 seq2290 168 5e-37 seq1856 138 8e-28 >seq2660 Length=345280 Score = 562 bits (622), Expect = 2e-155 Identities = 464/566 (82%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 296988 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 297047 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| |||||| | |||||| ||||||| | ||||| ||||||| Sbjct 297048 TCAGAAAGAACACCTGGGTATTCTGAGAGAAGTTTATATTTCTTCAAATCAATTTCTGGA 297107 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||||| || | Sbjct 297108 AAAAATGTGTCGCTTTCAAAGTCCTGCATGATCCTTGTCACAAACAGTTTAAGATGGCCT 297167 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 297168 GGTTGATTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACT 297227 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||||||| ||||| || || ||||||||||| |||||| | | ||| ||||| | | Sbjct 297228 TTATTTGCTAACTCTGGTTGCTCAGTAAGTTTTAAGGCATCACCCAGACTTTTAGCCACA 297287 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| |||||| ||||| ||||| | || ||||| |||||||||||| | Sbjct 297288 AAATGAGCTCCTTGTGGAGTTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCC 297347 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| || |||||||||||||| |||||||| || || ||||||||||||||| | Sbjct 297348 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACTAGA 297407 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||||| || || |||||| ||||||||| || || |||||| Sbjct 297408 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTC 297467 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | ||| ||||| |||| || || | ||||||||||||||||| || | ||||| Sbjct 297468 CTGAGTGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGGGACACAGCG 297527 Query 4507 ACAATGCAGTTTAGTGCTTGAACCAT 4532 || ||||||||||| | ||||||| Sbjct 297528 ACGATGCAGTTTAGCGTACGAACCAT 297553 >seq2290 Length=263297 Score = 168 bits (186), Expect = 5e-37 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 || || || || ||||| |||||||| || ||| ||||||||||| |||| || || Sbjct 160099 ACGATCGGGGTGACGCAGGTGCAGCCCACGTCCACCAGCATCTTCTCCAGCCGGAAGGAG 160040 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | |||||| | | | || | |||||| || || ||||| || ||||| | ||| ||| Sbjct 160039 TAGGGGCAGTGCTTAGGCTCCCTGCGCAGAACCAGGATCTCCTGCTGGATGGCGACGGAG 159980 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||||||||| || ||||| |||||||| || || || | || ||||||| | ||| Sbjct 159979 TTCATGTGGTAGTCCACCTTCCCCTCAGCATTGACGCAGCCCAGGTGGCGACACCTGGCT 159920 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||| ||||||||||| || | || |||||||| Sbjct 159919 TCCCAGATCACTGAGGGATATCTCTCAGGGTCCTCATTGCG 159879 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||||||||||| || || |||| |||||||| || || | |||||| | | | ||| Sbjct 158545 TGGAGAGTCCAAGGTGAAGTGGATCGGTTGTAGTAATCGGAGGGCCTTTTGGGATTCGTA 158486 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTG---TTAGCA 27290 |||| ||| ||||| ||| | | ||| |||||| | | || ||| | ||| | || | Sbjct 158485 TTCCGGTTGAGGATGTTCAGATTGACCTTCACAGTCTGGGGGAAGTTCTTGCCCTCAGTA 158426 Query 27291 GCTAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | ||||| ||| |||||| ||||| |||| ||| | | | || | | | ||| Sbjct 158425 TTTGGGCATCCTGGATTTTGTGGGCTTGCTATTCCTGCCATCATTACAGCCGCCAGACTC 158366 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 158365 AGCAGCAGCAG 158355 >seq1856 Length=877339 Score = 138 bits (152), Expect = 8e-28 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||||||| ||||| Sbjct 124836 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 124777 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||||||| |||||| | | ||| ||||| | ||||||||||| |||||| Sbjct 124776 TGCTCAGTAAGTTTTAAGGCATCACCCAGACTTTTAGCCACAAAATGAGCTCCTTGTGGA 124717 Query 4285 AGCTCC 4290 | ||| Sbjct 124716 GGTTCC 124711 Score = 120 bits (132), Expect = 2e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| ||||| |||||||||||| ||||| | ||||||||| ||||| Sbjct 128332 AAGTTTATATTTCTTCGAATCAATTTCTGGAAAAAATGTGTCGCTTTCAAAGTCCTGCAT 128273 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||||||||||||||||| || ||| | | |||| ||||| || Sbjct 128272 GATCCTTGTCACAAACAGTTTAAGATGGCCTGGTTGATTCATGGCTTCCTT 128222 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || ||||| |||||||||||| | |||||||| || ||||||||||| Sbjct 114206 CTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 114147 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 114146 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 114098 Score = 105 bits (116), Expect = 5e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 135504 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 135445 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAA 4056 | ||||||||||| ||| || ||||| ||| Sbjct 135444 TCAGAAAGAACACCTGGGTA-TCTATAAAA 135416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361082279729117