Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1400 136 5e-27 seq194 123 3e-23 seq98 122 1e-22 seq5886 116 4e-21 >seq1400 Length=560904 Score = 136 bits (150), Expect = 5e-27 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383 ||||| || |||||||| || ||||||||||| || || || ||||| |||||| | | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 |||| || ||||||| |||| || || | | ||||||||| || ||||| ||| Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503 |||| ||||| ||||| || || |||||||| || || |||||||| || ||| Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 24504 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | ||| || || || | || ||||| ||| | |||| || |||||||| || |||| Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCA 277536 >seq194 Length=1934172 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 226891 CTACAACACGTTCTCC 226876 Score = 113 bits (124), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 225074 >seq98 Length=373882 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 70750 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 70691 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 70690 GACTCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 70631 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 70630 CTGTTTCTTACACCATA 70614 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || ||||| ||||| || || | | Sbjct 43329 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAAGA 43270 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | || ||| |||| Sbjct 43269 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 43210 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 43209 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 43164 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 59967 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 59908 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 59907 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 59848 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 59847 AGGCTCCAGGTAGAT 59833 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 73042 >seq5886 Length=918977 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 173082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 173141 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 173142 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 173201 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 173202 ACCACTCTTTCCCC 173215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593436858542160