Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1400 136 5e-27 seq1920 125 9e-24 seq98 116 5e-21 seq194 114 2e-20 seq5886 107 2e-18 >seq1400 Length=560904 Score = 136 bits (150), Expect = 5e-27 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| || |||||||| || ||||||||||||||||| |||||||| |||||| | | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 |||| || ||||||| | || || || | | ||||||||| || ||||| ||| Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 |||| ||||| || || || || |||||||| || || |||||||| || ||| Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | ||| || || || | || ||||| ||| | || | || |||||||| || |||| Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCA 277536 >seq1920 Length=607093 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | |||||||| || ||||||||||||| ||| Sbjct 448065 GTTACTTTCTATGATGTCTATATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 448006 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 448005 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 447947 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 ||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 455671 GCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGTGCACA 455612 Query 188233 TACGAATGG 188241 | ||||||| Sbjct 455611 TCCGAATGG 455603 >seq98 Length=373882 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 70750 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 70691 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 70690 GACTCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 70631 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 70630 CTGTTTCTTACACCATA 70614 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 73042 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || ||||| || | | Sbjct 59967 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 59908 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 59907 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 59848 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 59847 AGGCTCCAGGTAGATAGC 59830 >seq194 Length=1934172 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 33724 C 33724 | Sbjct 226891 C 226891 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 225074 >seq5886 Length=918977 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 173082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 173141 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 173142 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 173200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629515547351760