Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq194 125 7e-24 seq5886 114 1e-20 seq98 104 2e-17 >seq194 Length=1934172 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | |||||||||| ||||||||| || Sbjct 227009 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 226950 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 226949 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 226890 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 226889 ACAACACGTTCTCC 226876 >seq5886 Length=918977 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 173080 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 173139 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 173140 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 173199 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 173200 CCACCACTCTTTCCCC 173215 >seq98 Length=373882 Score = 104 bits (114), Expect = 2e-17 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 37111 AGTTCTCTCAATAGGTGTGGATTTACA------ACCTGAAAATCTCCAGATAATACTCTT 37164 || |||||| |||||| ||| | | | |||||||| ||||| || || ||||| Sbjct 70783 AGATCTCTCTATAGGTCTGGTTGTGAACTGCTCACCTGAAATTCTCCTGACAAGACTCTG 70724 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 | ||||| || ||||| || || |||||||||||||||||||| | | || |||| Sbjct 70723 CGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGACTCATTATTGCCCAGGATCTGAGCA 70664 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || |||||||||||||| || || || | || ||||| | |||| Sbjct 70663 GTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTGTTTCTTACACCAT 70615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || || ||||| ||||||||||| | | || | || Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || |||||||| | ||| || Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTT 73056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468300101362480