Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1920 170 3e-37 seq1400 136 5e-27 seq98 122 1e-22 seq194 120 4e-22 seq5886 111 2e-19 >seq1920 Length=607093 Score = 170 bits (188), Expect = 3e-37 Identities = 162/206 (79%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | |||||| |||| ||| |||||||||||||| Sbjct 444390 TTACTTTTTATTAACTGCTTCCAGAAACCTTAACAGGTGCAGGAATAGATTGATGATATC 444449 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||| | ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 444450 CAAGTAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGTTTATGCATCAGTGA 444509 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||| ||| |||||||||||||| | ||| || || | ||||| || ||||| Sbjct 444510 GTGTGTATCATGGATGATGAATCCGCAGAAAAGAAGTGCTCCTACAGCAGCCAAGACCAA 444569 Query 9407 CTCCACTGTTTCACTTTGCACAAATA 9432 ||||| ||| ||| ||| | ||||| Sbjct 444570 CTCCATTGTCTCA--TTGTAAAAATA 444593 Score = 156 bits (172), Expect = 6e-33 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||||||||||||||||| | ||||| Sbjct 447947 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 448006 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | || ||||||||||||||||| Sbjct 448007 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATATAGACATCATAGAAAGTAAC 448065 Score = 98.7 bits (108), Expect = 1e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 455603 CCATTCGGATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 455662 Query 9907 TGGAGGAGC 9915 | ||||||| Sbjct 455663 TCGAGGAGC 455671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 ||||||| | |||| | | |||||||||||||| ||| || || | || ||||| Sbjct 453106 TGTATAAATGTCCGTACAGACTCAAAGTATAAAAAAGCTGTAGAAGTCACTGTAGTTAAG 453165 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 453166 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 453209 >seq1400 Length=560904 Score = 136 bits (150), Expect = 5e-27 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| || |||||||| || ||||||||||| || || || ||||| |||||| | | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 |||| || ||||||| |||| || || | | ||||||||| || ||||| ||| Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 |||| ||||| ||||| || || |||||||| || || |||||||| || ||| Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 | ||| || || || | || ||||| ||| | |||| || |||||||| || |||| Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCA 277536 >seq98 Length=373882 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 70750 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 70691 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 70690 GACTCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 70631 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 70630 CTGTTTCTTACACCATA 70614 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || ||||| ||||| || || | | Sbjct 43329 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAAGA 43270 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 43269 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 43210 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 43209 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 43164 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 73042 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | ||| |||| | Sbjct 59967 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 59908 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 59907 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 59848 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 59847 AGGCTCCAGGTAGATAGC 59830 >seq194 Length=1934172 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 36300 C 36300 | Sbjct 226891 C 226891 Score = 113 bits (124), Expect = 6e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 225074 >seq5886 Length=918977 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 173082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 173141 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 173142 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 173200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657857148552280