Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq194 123 2e-23 >seq194 Length=1934172 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 226891 CTACAACACGTTCTCC 226876 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 228514 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 228456 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 228455 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 228396 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 228395 CATAAAGTCAAATGGATTT 228377 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| ||||||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 225187 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 225128 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 225127 GAAGCCATAGAAACAGCGAGCTTC 225104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479497928447800