Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1400 141 1e-28 seq194 129 8e-25 seq98 120 4e-22 seq5886 116 5e-21 >seq1400 Length=560904 Score = 141 bits (156), Expect = 1e-28 Identities = 175/238 (74%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| || |||||||| || ||||||||||||||||| |||||||| |||||| | | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 |||| || ||||||| |||| || || | | ||||||||| || ||||| ||| Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 |||| ||||| || || || || |||||||| ||| || |||| ||| || ||| Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | ||| || || || | || || || ||| | |||| || |||||||| || |||| Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCA 277536 >seq194 Length=1934172 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 42207 C 42207 | Sbjct 226891 C 226891 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | || || |||| ||| |||||| | |||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 225074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 228515 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 228456 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || ||||| || || | || || || || |||||||||||||||| ||| ||||| || Sbjct 228455 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 228396 Query 41836 CATGAAATCAAACGGATT 41853 ||| || ||||| ||||| Sbjct 228395 CATAAAGTCAAATGGATT 228378 >seq98 Length=373882 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 70750 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 70691 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 70690 GACTCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 70631 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 70630 CTGTTTCTTACACCAT 70615 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || || || || | Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 73042 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || ||||| |||| | || Sbjct 59963 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 59904 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || |||||||| || Sbjct 59903 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 59844 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 59843 TCCAGGTAGATAGC 59830 >seq5886 Length=918977 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 173082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 173141 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 173142 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 173200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670817330028920