Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2283 156 1e-32 seq4169 140 7e-28 seq1562 132 1e-25 seq4625 131 4e-25 seq4569 122 2e-22 seq5886 114 3e-20 seq3087 113 1e-19 seq1065 109 1e-18 seq573 107 4e-18 seq2648 89.7 1e-12 seq194 89.7 1e-12 >seq2283 Length=901578 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || ||||| | ||| ||||| || || || || Sbjct 857258 GTCGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 857199 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || |||||||||||||| ||||| || || Sbjct 857198 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 857139 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 857138 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 857079 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| || ||||||||| Sbjct 857078 TTCACAAAGATTTGCATTTTG 857058 >seq4169 Length=151675 Score = 140 bits (154), Expect = 7e-28 Identities = 161/212 (76%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA-TA-GAGTTCTACCGTCTTCTA 104411 ||||| | || || || || ||||| || |||||| | || | || || ||||| | Sbjct 18124 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAAGTACGTGT----CCATCTTCCA 18179 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 |||| || ||||||||||| || || || ||||||||| |||||||| |||||||| | Sbjct 18180 GTTGCTTGCCAGCAAAAATCAGTCT-TGCTGATCAGGA---ATTCCTTCCTTATCCTGGA 18235 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531 |||| || |||||||||||| ||||| ||||| ||||| || | |||||||| | Sbjct 18236 TCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGCGATAGTCTTCC 18295 Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||| | |||||| || |||||||| ||| Sbjct 18296 CTGTAAGGGCTTTTACGAAAATCTGCATCTTG 18327 >seq1562 Length=962321 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||||||| | ||| || || | ||| ||||| || ||| Sbjct 541053 GTGGACTCCTTTTGAATGTTCTAGTCAGACAAAGTACTTCCATATTCCAGTTGCTTGCCA 540994 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || ||||||||||| ||| || |||||||| ||||| | ||| Sbjct 540993 GCAAAAATCAATCTTTGCTGATCAGGAGGAATTTTTTGCTTATCCTGGATCTTGACCTTT 540934 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||||||| ||||| ||||| |||| || | | ||||| || ||||| ||| Sbjct 540933 ACATTTTCTGTTGTATCTGAGGGTTCAACCTTGAGAATGGTGGTCTTCCCTGTAAGGGTT 540874 Query 104543 TTTACAAATATCTGCATTTTG 104563 |||| || |||||||| ||| Sbjct 540873 TTTATGAAAATCTGCATCTTG 540853 >seq4625 Length=314844 Score = 131 bits (144), Expect = 4e-25 Identities = 151/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || | || || ||||| ||||||||| | || | || ||||| Sbjct 137062 ACAAGATGAAGAGTGGTCTCCTTTTGAATGTTATAGTCAAA----GTACGTCCATCTTCC 137117 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||||||| || || || || |||| ||| |||||||| |||||||| Sbjct 137118 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTTCCTTATCCTGG 137177 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| | |||||||||| || ||||| ||||| |||| || || || ||||| Sbjct 137178 ATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAGTGATGGTCTTC 137237 Query 104531 CCAGTAAGTGTTTTTACAAATAT 104553 || ||||| |||||||| || || Sbjct 137238 CCTGTAAGGGTTTTTACGAAAAT 137260 >seq4569 Length=367135 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGT-AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 || ||||| || || || | |||| ||||| || | ||| || | || | || ||||| Sbjct 167183 ACAAGATGAAAAGTGAGCTCCTTT-TGAATGTTGTGGTCTGACAAAGGACATCCATCTTC 167241 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || ||||||||||| || || || |||| |||||| |||||||| |||| | | Sbjct 167242 CAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATAAGGAGGAATTCCTTCCTTATGCGG 167301 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| |||||| | |||| || || || ||||| ||||| | | || ||||| Sbjct 167302 GATCTTGGCTTTTCCTTTTTATATAGTGTCCGAGGGTTCGACCTCAAAAATGATGGTCTT 167361 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||||||| || |||||||| ||| Sbjct 167362 CCCCATAAGGGTTTTTATGAAAATCTGCATCTTG 167395 >seq5886 Length=918977 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 173215 GGGGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 173156 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||| ||||| |||||||| ||| | ||||| || || ||| | Sbjct 173155 GCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 173096 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 173095 ATCAGCAGAGATGAAG 173080 >seq3087 Length=630865 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||| | || || | || ||| | || |||||||| | Sbjct 260048 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACTGTGTTTTTCATCCTGAGG 260107 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| || ||| || |||||||||||||| | ||| |||||||| ||| Sbjct 260108 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 260167 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| | ||||| ||||||| Sbjct 260168 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACAAG 260204 >seq1065 Length=383968 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || |||| || |||||||| |||| || |||||||| | | | |||||||| Sbjct 247989 TCCTTTTGAACTTTGTAGTCAGACAGAGAATGTCCATCTTCTAGGTTTCTGCCAGCAAAG 248048 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 | || | || ||||||||||| ||| |||| |||||||| ||||| || || | ||| Sbjct 248049 GTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTATCCTGGATCTTGGCCTTCATATTG 248108 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| ||||| ||||| || | || || || || || || ||||| | ||||| Sbjct 248109 TCTATTGTATCCAAGGGTTCAACTTTAAGAGTGATGGTTTTCCCTGTAAGAGCTTTTATG 248168 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 248169 AAAATCTGCATCTTG 248183 >seq573 Length=363558 Score = 107 bits (118), Expect = 4e-18 Identities = 137/185 (74%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || | || || ||||| || || ||| | || | || |||| Sbjct 311946 ACAAGATGAAGAGTGCACTCCTTTTGAATGTTGTAATCAAA----GTACATCCATCTTGC 312001 Query 104411 AGTTGTTTTCCAGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCT 104468 ||||| || |||||||||| |||| || || ||||||||||| |||||||| ||||||| Sbjct 312002 AGTTGCTTGCCAGCAAAAAAATTAGTCTTTGCTGATCAGGAGGAATTCCTTCATTATCCT 312061 Query 104469 GAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTC 104527 | ||||| || ||||||||||||| |||| | ||| ||| |||| || || || ||| Sbjct 312062 GGATCTTAGCCTTTACATTTTCTATTATATC-CAAGGATTCAACCTTGAGAGTGATGGTC 312120 Query 104528 TTACC 104532 || || Sbjct 312121 TTCCC 312125 >seq2648 Length=382147 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||| | ||||||||||| || ||||| || || || |||| ||| || Sbjct 307713 GCAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTCTGCCTTG 307654 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || | || ||||| || || || | ||| ||||| || || Sbjct 307653 ACATTCTCAATGGTGTCACTGAGCTCGACCTCAAGGGTGATGGCCTTGCCAGTCAGGGTC 307594 Query 104543 TTTACAAATATCTGCAT 104559 || | ||| |||||||| Sbjct 307593 TTCAAAAAGATCTGCAT 307577 >seq194 Length=1934172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 228372 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTT 228431 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 228432 GAGAAGAGAGTAGGCGAATATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 228491 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 228492 TTTACCTTGGATGCTGACTTCTAA 228515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150832398812836