Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8239 107 1e-18 >seq8239 Length=161809 Score = 107 bits (118), Expect = 1e-18 Identities = 124/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| ||||| | || || |||||||||||||| || ||||||||||||||| || || Sbjct 148500 TAGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 148559 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609 || || | ||||||| | ||||||| |||||| ||||| || || ||||| ||| Sbjct 148560 CACGCCCAGGCCCATGT-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 148618 Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | | || |||||||| || || || || Sbjct 148619 CCACGTAGAACTGGCAGAGCGCGTGACACGGAGGCAGCGCCATCAG 148664 Score = 89.7 bits (98), Expect = 3e-13 Identities = 123/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||| ||||| || || || || || | ||| Sbjct 151787 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGACCCAAGTC 151846 Query 25833 TCCATCTTCCCTGTGCTCAA--AGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCG 25890 || || |||| || | | | ||| ||||| |||| ||| ||| ||||||||| Sbjct 151847 CCCTTC--CCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGCCTCGGGATCCATTGGCG 151904 Query 25891 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||| || || ||||| || || ||||| | ||||||||| || Sbjct 151905 TCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCGTTTGTGGATCC 151954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339978552402291