Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq899 93.3 4e-14 seq194 93.3 4e-14 seq5886 89.7 5e-13 seq305 82.4 8e-11 >seq899 Length=377211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 145456 GAATATAAAAGAGACCCTAAAAAGATGCATAATGGAACCATAGAATTTACTAGCATCGAT 145515 ||||| ||| |||||| |||| | ||| |||| ||||| ||||| || ||||||||| Sbjct 247949 GAATACAAAGAAGACCCCAAAAGGTGTCATGATGGCACCATTGAATTCACCAGCATCGAT 248008 Query 145516 ATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTATG 145575 ||| ||| | ||| || || || || ||||| |||||| | ||||| || ||| Sbjct 248009 GCACATAATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTACTGCATG 248068 Query 145576 ATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG-T 145634 || ||| | ||| | | || |||||||||||||| ||| || ||| |||| | Sbjct 248069 ATCCAGTGGCTGACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAAATATGTT 248128 Query 145635 AATGAATTCAAAAGTAGA 145652 | || | ||||| |||| Sbjct 248129 AGAGATTCCAAAATTAGA 248146 >seq194 Length=1934172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| | Sbjct 228515 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 228456 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||||||||||| ||| ||| || Sbjct 228455 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 228396 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 228395 CATAAAGTCAAATGGATTTTC 228375 >seq5886 Length=918977 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | Sbjct 166584 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACCGCAAAAC 166643 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 || || || ||||| ||| || || |||||||| ||||||| ||| || || || Sbjct 166644 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGCAAAGAAATGTTTT 166703 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 166704 CCATAAAATCAAAGGGATTTTC 166725 >seq305 Length=513795 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||| Sbjct 58683 AATGTCCAATTCCTTGTGTCTTCAGAAAAGTAAAAACATTTACTTCCAAATCCAATCCAG 58624 Query 130776 CCCTTTGGGCAAGTAACATA 130795 || | ||||| | | |||| Sbjct 58623 CCTTCCGGGCAGGCAGCATA 58604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531645707025080