Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1400 132 6e-26 seq98 122 1e-22 seq194 120 4e-22 seq5886 111 2e-19 >seq1400 Length=560904 Score = 132 bits (146), Expect = 6e-26 Identities = 173/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 ||||| || |||||||| || ||||||||||| || || || ||||| |||||| | | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 |||| || ||||||| |||| || || | | ||||||||| || ||||| ||| Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 |||| ||||| ||||| || || ||||| || || || |||||||| || ||| Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | ||| || || || | || ||||| ||| | |||| || |||||||| || |||| Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCA 277536 >seq98 Length=373882 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 70750 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 70691 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 70690 GACTCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 70631 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 70630 CTGTTTCTTACACCATA 70614 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || ||||| ||||| || || | | Sbjct 43329 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAAGA 43270 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 43269 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 43210 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 43209 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 43164 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 59967 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 59908 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 59907 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 59848 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 59847 AGGCTCCAGGTAGATAGC 59830 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 73212 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 73153 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 73152 TCAAAGACTGGCTTTGATCAATGAAAGCCCCTCTCTCGGCTGCCATCTTGAGAACAGTTT 73093 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 73092 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 73042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || |||||||| ||||||||| Sbjct 49202 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAC 49143 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| || || || || ||||| || | || || || || |||||| Sbjct 49142 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATC 49083 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 49082 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 49044 >seq194 Length=1934172 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 227011 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 226952 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 226951 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 226892 Query 32803 C 32803 | Sbjct 226891 C 226891 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | ||| || |||||||| |||||| | |||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 225074 >seq5886 Length=918977 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 173082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 173141 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 173142 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 173200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633328118013200