Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6496 192 1e-43 seq2283 154 3e-32 seq2648 111 3e-19 seq2477 100 5e-16 >seq6496 Length=1068356 Score = 192 bits (212), Expect = 1e-43 Identities = 181/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||||||||| |||||||| || ||||| Sbjct 914129 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 914188 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| | ||||||||| || || || || || || || || || || Sbjct 914189 AAGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGG 914248 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||||||||| |||||||||||||| |||||||||||| ||| | || || Sbjct 914249 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCGAC 914307 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 914308 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 914355 Score = 188 bits (208), Expect = 1e-42 Identities = 170/211 (81%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || ||||| | || | ||||||||| Sbjct 914375 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCC 914434 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||||||||| || || || || || ||||| || || ||||| ||||||||||| Sbjct 914435 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 914494 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| |||||||||||| ||| | || || || | ||||||||| || Sbjct 914495 ATCTTTGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTCGAGGGTGATGGTCTT 914553 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| ||||||||| Sbjct 914554 GCCAGTCAGGGTCTTCACGAAGATCTGCATT 914584 >seq2283 Length=901578 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || ||||| || || | |||||||| Sbjct 857270 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 857211 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || || |||||||| || || || Sbjct 857210 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 857151 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || |||||||||||| | || || |||| ||||||||| || Sbjct 857150 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 857091 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| || || || |||||| || Sbjct 857090 CCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 857058 >seq2648 Length=382147 Score = 111 bits (122), Expect = 3e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 ||||||||| | || |||| ||| || || ||||| | || || || || |||||||| Sbjct 307735 CCCATCTTCCAGCTACTTCTTGGCAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTC 307676 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGG 68421 ||||||||| |||| ||||||||| ||| |||||||| |||| || || || | || Sbjct 307675 CTTGTCTTGGATCTCTGCCTTGACATTCTCAATGGTGTC-ACTGAGCTCGACCTCAAGGG 307617 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| | || |||||||| Sbjct 307616 TGATGGCCTTGCCAGTCAGGGTCTTCAAAAAGATCTGCAT 307577 >seq2477 Length=1236505 Score = 100 bits (110), Expect = 5e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326 ||||||||| || ||| | |||||| || || ||||| || | ||| || || || Sbjct 1060107 GGACTCTTTCTGAATGCTGGGATCGGAAAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGC 1060048 Query 68327 GAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||||| || || ||||| |||| ||||| ||||||||||| || || || ||||| Sbjct 1060047 AAATATCAGGTGCTGCTGGTCAAGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGAC 1059988 Query 68387 GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 ||| ||||||| | || || || | ||||||||| || ||| | |||||||| Sbjct 1059987 ATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATCAGGGTCTT 1059928 Query 68447 GACGAATATCTGCAT 68461 || || |||||||| Sbjct 1059927 CAC-AAAATCTGCAT 1059914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921180401417240