Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3842 194 2e-44 seq1231 127 3e-24 >seq3842 Length=375763 Score = 194 bits (214), Expect = 2e-44 Identities = 214/285 (75%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || |||||||| || ||||| |||||||||| || || || | ||| Sbjct 12706 AAGGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATGGAGGCAGTGTTGATGATT 12647 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| | || || || || | Sbjct 12646 TTAAAACCTACTTCGCCACCAAAAGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGCA 12587 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| | ||||| ||| Sbjct 12586 TTACCCATCAGTCCTTTCAAGGAGAAGGGTGCTCCAACTTCTACCATGGTTTCACCAAAG 12527 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | ||||| ||||| || | ||| || | | Sbjct 12526 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGCCAGGATAGAGCTCCATAGCGTCAATG 12467 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 12466 TCGCCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCACCT 12422 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || |||| |||||| || |||||||| || || || || || || |||||||| | Sbjct 11039 TGGTCTGGAACAGCTGCTCATCGCCCCATTCTGGATGCTCCTGCTTAAGCACATCGCACA 10980 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | | ||||||||| | |||||| || |||||||||||||| | || ||||| | |||| Sbjct 10979 CTCGGTTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGCCCAGGCACCAGCCCAA 10920 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | ||||| ||||| |||| | || || | ||| | ||| | ||| | Sbjct 10919 AGACTTCCTGTCCCACAGCAAACTGCAGGTGTTCAGGGGTATGGGGGGGATAGATCATCT 10860 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 |||| || |||||||| ||||| ||||||| ||| || ||||| | |||| Sbjct 10859 CTGCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCTGA 10807 Score = 140 bits (154), Expect = 5e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 9888 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 9829 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 9828 AAATTGATGAGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 9769 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || || ||| |||||||||| | ||||||| || || Sbjct 9768 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 9712 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| || || ||||| || | ||| ||| Sbjct 8995 TCACCTTTCACACCCATGGGAGTTGGGCAGTCTTCAGCCACAGGAGGAAGGGCTCTGGTA 8936 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || |||||||||||||| ||||||||||| | | || || Sbjct 8935 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCATAGTGCATATTATAAGTT 8876 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||| |||||| Sbjct 8875 GGTGGACTATCAATCAAATGGGATCTGGCT 8846 Score = 102 bits (112), Expect = 1e-16 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| ||| | ||||| |||||||| || |||| | ||| || | | || || Sbjct 11637 CCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCCAGTAGTATA 11578 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || | | || | || |||| | || Sbjct 11577 GAGTTGTTGTAGAGAAACTGTTGATAGTTGTATTCCTGATCCTCAATCTGAAAGGCGTCG 11518 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||| || || ||||| || || || |||||||||||| Sbjct 11517 GGCAGAAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCGATGCGGTTCTGGTAC 11458 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | |||| |||||| || || | Sbjct 11457 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATAGCCAC 11400 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | | ||||| || || | | || | ||| ||||| || || || || Sbjct 11399 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTCTCTCCTGT 11351 >seq1231 Length=1099651 Score = 127 bits (140), Expect = 3e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || | ||||| || ||| || ||||| || ||||| || ||||||||| Sbjct 787736 GTGGCCGTCTTGATGATGTTAAACCCTGTCTCACCGCCAAATGTGCTTGGCTTCCAGTAC 787795 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| | | ||| ||||| | |||||| |||||||| | ||| Sbjct 787796 TCTGGGGAGCAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCT 787855 Query 9053 ATGATGCTCTCACCGAAGAT-GGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 || || ||||| || ||||| | ||| | || ||||| | | || || | ||| Sbjct 787856 ATCATACTCTCCCCAAAGATAGAGTTCGGTAGGC-ACTTTTCAAGAAGCAACCCTGGGTA 787914 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | || |||| ||| || || || | |||||||| || || ||||||||||| Sbjct 787915 GAATTCCAAGGCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCTTCTC 787974 Query 9172 ACCTACAAG 9180 ||| |||| Sbjct 787975 TCCTGCAAG 787983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723380909097800