Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2283 143 6e-29 seq6496 111 4e-19 seq4625 111 4e-19 seq1562 105 2e-17 seq4169 89.7 1e-12 seq142 89.7 1e-12 >seq2283 Length=901578 Score = 143 bits (158), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| ||||||||| | | ||| | |||||| Sbjct 857273 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCT 857214 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || |||||| ||| Sbjct 857213 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 857154 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 857153 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 857094 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||||||| ||||| |||||| Sbjct 857093 TTGCCGGTCAGGGTCTTCACAAAGATTTG---CATTTT 857059 >seq6496 Length=1068356 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||| ||||||||| | ||| || | |||||| Sbjct 914372 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 914431 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || | ||||||||| || || || || || Sbjct 914432 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 914491 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 914492 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 914551 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 914552 TTGCCAGTCAGGGTCTTCACGAAGATCTG 914580 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| || || ||||| || |||| ||||||||| | ||| || | ||||| Sbjct 914143 CAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 914202 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || || || || || Sbjct 914203 TTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTGTC 914262 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 914263 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 914322 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 914323 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 914352 >seq4625 Length=314844 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || ||||| | ||||||||| | ||| |||||| |||| | Sbjct 137051 GAAGTCTCAACACAAGATGAAGAGTGGTCTCCTTTTGAATGTTATAGTCA----AAGTAC 137106 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || || || || | |||||||| | | |||||||| Sbjct 137107 GTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTT 137166 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || || | || |||| | ||| || | | | Sbjct 137167 CCTTATCCTGGATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAG 137226 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||| ||||| || || || ||||| || ||||| Sbjct 137227 TGATGGTCTTCCCTGTAAGGGTTTTTACGAAAAT 137260 >seq1562 Length=962321 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||||||| ||||| ||||||||||| | ||| ||||||| |||||| Sbjct 541077 CGAAGTCTCAACACAAGGTGAAGAGTGGACTCCTTTTGAATGTTCTAGTCAGACAAAGTA 541018 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||| |||||| ||||| || || || || | | ||||| || ||| |||| | Sbjct 541017 CTTCCATATTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGATCAGGAGGAATTTTT 540958 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 | ||||| ||||| ||| || ||| || |||| | ||| || | | Sbjct 540957 TGCTTATCCTGGATCTTGACCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTTGAGA 540898 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||||| || || || ||||| | ||||| || Sbjct 540897 ATGGTGGTCTTCCCTGTAAGGGTTTTTATGAAAATCTG 540860 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | || || || || ||||| ||||| ||||||| |||||| | || || ||| Sbjct 540978 AAAGATTGATTTTTGCTGGCAAGCAACTGGAATATGGAAGTACTTTGTCTGACTAGAACA 541037 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||||||||| ||||||||||| Sbjct 541038 TTCAAAAGGAGTCCACTCTTCACCTTGTGTTGAGACTTCG 541077 >seq4169 Length=151675 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| |||| || ||||| ||||||||||| | |||||||| |||||| | Sbjct 18110 GAAGTCTCAACGCAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGT----CAAAGTAC 18165 Query 199470 --TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||||||| ||||| || || || || || | ||||| || || |||||| Sbjct 18166 GTGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTC-TTGCTGATCAGG---AATTCC 18221 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || ||| || || | | ||| || || | Sbjct 18222 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAG 18281 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| ||||| || || || | ||| || ||||| || Sbjct 18282 AGCGATAGTCTTCCCTGTAAGGGCTTTTACGAAAATCTG 18320 >seq142 Length=647495 Score = 89.7 bits (98), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||| ||||| | || || ||||| ||||| ||||| |||||| ||||| |||| | Sbjct 530152 GAAATCTCAACATAAAATGAAGAGTGGACTCTTTTTGAACGTTGCAGTCA----AAGTAC 530097 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | ||||| || ||||||||| ||| Sbjct 530096 ATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAAAATTTCTT 530037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178342069035589