Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6496 145 8e-30 seq2283 132 5e-26 seq1400 86.0 6e-12 seq2477 82.4 8e-11 seq194 82.4 8e-11 >seq6496 Length=1068356 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 914584 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 914525 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 914524 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 914465 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | ||||||| | ||||||||| Sbjct 914464 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 914405 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| ||||||| ||| | ||||| || Sbjct 914404 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 914357 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 914355 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 914296 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| ||||| || ||| | || || Sbjct 914295 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 914236 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | ||||||| | |||||||||| Sbjct 914235 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 914176 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| ||||| ||||| ||||| || || Sbjct 914175 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 914129 >seq2283 Length=901578 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || || ||||| ||||||||| | || || ||| || Sbjct 857059 AAAATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 857118 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || ||||| || || ||| | ||| Sbjct 857119 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGAC 857178 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||| Sbjct 857179 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTAC 857238 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || |||| ||||| |||| || || ||||| || ||| Sbjct 857239 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGCTTGAGGGGTGGC 857289 >seq1400 Length=560904 Score = 86.0 bits (94), Expect = 6e-12 Identities = 174/254 (69%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 133076 TCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCA 133135 |||| |||| ||||| || ||||| | || || || ||||||||||| ||||| || | Sbjct 277779 TCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGA 277720 Query 133136 ACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 | | || ||| ||| | | | | | ||||| |||||| | |||||| | Sbjct 277719 AGA----GAAATTCCCTTTCTTTGGAATCTTTAATGTGTCCATGAGGAAC-TATACATCT 277665 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 | || |||| ||| | |||||| ||||| ||||| || || || | || || | || Sbjct 277664 CAGAATGTATGTTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCT 277605 Query 133256 GCACTTCTTGAGCGAAACGCTCGAC-CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 | || ||||| |||||||| || ||| || || || || |||||| ||| || || Sbjct 277604 GAACGTCTTGGCTAAAACGCTCCACTCAG-TTGTCATTTACTCTGCCGTTGCTTGCTGCA 277546 Query 133315 AAAAAGGCCAGCAC 133328 || || ||||| || Sbjct 277545 AAGAAAGCCAGAAC 277532 >seq2477 Length=1236505 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || | |||||| ||||||||| | || |||||| ||| Sbjct 1059914 ATGCAGATTTT-GTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1059972 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | |||| ||||||| ||||| ||||| || || ||||| Sbjct 1059973 GACACCACTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACTTGACCA 1060031 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || || | ||||||||||||||||| || | | ||| || ||| || Sbjct 1060032 GCAGCACCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCCGATCCCAG 1060091 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | | ||| | |||||| | | || |||| ||| Sbjct 1060092 CATTCAGAAAGAGTCCGCCCTGAACCAGGTGCTTCATCTGCGAGGTGGC 1060140 >seq194 Length=1934172 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 ||||||||| | |||||||| |||||||||||||| || ||||| ||| || || Sbjct 224097 ACCTCCTCGGCCGTCCAAAAGGACGCCTCGGCTTTCTTATACATTTGCCAAATATCATGG 224038 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||| || ||||| || ||||| ||| | |||||||| | || ||| || || Sbjct 224037 TATTCGATAGGAAAGATGACAAAGCGGTGAGGGTTTTCTCTCAGCAGTGGTTC 223985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499932923377280