Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2283 140 7e-28 seq6496 136 9e-27 seq4625 114 3e-20 seq1562 102 2e-16 seq4169 100 6e-16 seq2648 84.2 5e-11 >seq2283 Length=901578 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| |||| |||||| | |||||||| Sbjct 857270 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 857211 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || ||||||||||| || || Sbjct 857210 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 857151 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 857150 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 857094 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || || || | |||||||| Sbjct 857093 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTT 857060 >seq6496 Length=1068356 Score = 136 bits (150), Expect = 9e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | || ||||| || ||||||||||| || || ||||| |||| |||| | Sbjct 914362 TCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAG-G 914420 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||||||| |||||||| || || ||||| || | || ||||| || || |||| Sbjct 914421 TGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 914480 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 | || |||||||| || ||| |||||| ||||| |||||||| || || || | Sbjct 914481 CCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGA 914540 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| | ||||| || |||| || || ||||| | |||||| Sbjct 914541 GGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 914584 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||||||||||| || || ||||| |||| |||| || | ||||||||| |||| Sbjct 914152 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAG-GTGCGCCCATCTTCCAGCT 914210 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| || | || || || || || ||||| || |||||||| || | Sbjct 914211 GCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCT 914270 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || |||||| ||||| |||||||| || || || ||||| | ||||| || | Sbjct 914271 TTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGG 914330 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 914331 TCAGGGTCTTCACGAAGATCTGCAT 914355 >seq4625 Length=314844 Score = 114 bits (126), Expect = 3e-20 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||| ||| |||||||| || || || | ||| | Sbjct 137053 AGTCTCAACACAAGATGAAGAGTGGTCTCCTTTTGAATGTTATAGTC----AAAGTACGT 137108 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| ||||| | |||||| ||||| Sbjct 137109 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTTCC 137168 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || | || || || || ||| || | || || Sbjct 137169 TTATCCTGGATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAGTG 137228 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| ||||| | ||||||||||| Sbjct 137229 ATGGTCTTCCCTGTAAGGGTTTTTACGAA 137257 >seq1562 Length=962321 Score = 102 bits (112), Expect = 2e-16 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| |||||||||||||||||||| |||||||| || || || | | ||| || Sbjct 541074 AGTCTCAACACAAGGTGAAGAGTGGACTCCTTTTGAATGTTCTAGTCAGACAAAGTACTT 541015 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||| ||| || ||||| || || || || | || ||| || || |||||||| || Sbjct 541014 CCATATTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGATCAGGAGGAATTTTTTGC 540955 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || || || ||| || | || | Sbjct 540954 TTATCCTGGATCTTGACCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTTGAGAATG 540895 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTGGTTC 195160 ||||| ||||| | ||||||| ||| | ||||| | ||| ||||||||| Sbjct 540894 GTGGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCATCT-TGG-----TGGTGGTTC 540843 >seq4169 Length=151675 Score = 100 bits (110), Expect = 6e-16 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAG-AGTTCT 194981 |||||||| |||| |||||||||||||| |||||||| ||||| || ||| | | | Sbjct 18112 AGTCTCAACGCAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC--AAAGTACGTGT 18169 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || || || |||| ||| || || |||||| ||||| Sbjct 18170 -CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTC-TTGCTGATC---AGGAATTCCTTC 18224 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || | || ||||| ||| || || || | Sbjct 18225 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGC 18284 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | | ||||||||| | ||||| Sbjct 18285 GATAGTCTTCCCTGTAAGGGCTTTTACGAAAATCTGCAT 18323 >seq2648 Length=382147 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||| |||| ||| || ||||| |||| | || || ||||| |||||||| Sbjct 307735 CCCATCTTCCAGCTACTTCTTGGCAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTC 307676 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099 |||||||| || | | |||||| ||||||||||||| | || | || || |||||| Sbjct 307675 CTTGTCTTGGATCTCTGCCTTGACATTCTCAATGGTGTCACTGAGC--TCGACCTCAAGG 307618 Query 195100 GTAACCGTCTTTCCTGTCA 195118 || | | ||| || |||| Sbjct 307617 GTGATGGCCTTGCCAGTCA 307599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108936204155489