Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq499 187 3e-42 seq8426 156 5e-33 >seq499 Length=855343 Score = 187 bits (206), Expect = 3e-42 Identities = 232/318 (73%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 1884 CAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCC 1943 |||| |||||| ||||| ||| |||||||| || || |||||||| ||||| || || Sbjct 493616 CAAAGCAGCTCAACCCCATTGAGGGTGAATGGAGTTCTAGGGGAGTCAGTAACTCTTACC 493675 Query 1944 CTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCTCC 2003 || | ||||||| || ||||| || | |||||||||||| ||||| || | || Sbjct 493676 TTGAAGTTTCCCGAAGGAAAGAAGGTCGATGCCATCACCTGGCTTTACAATGGAGCATCT 493735 Query 2004 ATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCGAAA 2063 ||| |||| || || || ||||| || || ||||| | |||||||| ||| Sbjct 493736 ATCACCTTCATAAAGCCAGATGAAGCCAAAAGTCCAACCATCCATGTGACCAATCCAAAA 493795 Query 2064 CTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAGATG 2123 ||| ||| ||| | |||||| ||||||| |||| | || || |||||||| |||| Sbjct 493796 TGGGGAGAGCAACTGAGCTTCACCCAGTCCTGCTCCTTGCATCTCAGCAACCTGACGATG 493855 Query 2124 GAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTTTCCAGC 2183 | |||||| || || ||||| |||| |||| || | | |||| | || | |||||||| Sbjct 493856 GCAGACACAGGATCTTACAGCGCCCAGATGACCACAGGGACCTCTGTAATACTTTCCAGC 493915 Query 2184 TACACGCTGAGGATCTTC 2201 ||||| |||||| ||||| Sbjct 493916 TACACTCTGAGGGTCTTC 493933 >seq8426 Length=164168 Score = 156 bits (172), Expect = 5e-33 Identities = 229/324 (71%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || | || |||||| || || ||| |||||||| || || |||||||| ||||| Sbjct 17945 GTTTCACGAAACAGCTCAACTCCATTGACGGTGAATGGAGTTCTGGGGGAGTCAGTAACT 17886 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || || || | ||||| | || |||| || | ||||||||||||| | ||| || Sbjct 17885 CTTGCCTTGAAGTTTCCTGAAGGAAAGAAAGTCGATTCCATCACCTGGCTTTGCAATGGA 17826 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || || ||||| || || || ||||| || || ||||| | |||||| Sbjct 17825 ACATCTATTGCCTTCATAAAGCCAGATGAAGCCAAAAGTCCAACTATCCATGTGACCAAT 17766 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| ||| ||||||| | |||||| ||||||| |||| | || || |||||||| Sbjct 17765 CCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTGCTCCTTGCATCTCAGCAACCTG 17706 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||| |||||| || || ||||| || |||| || | | |||| | | | || Sbjct 17705 ACAATGGCAGACACAGGATCTTACAGCAGCCAGATGACCACAGGGACCTCTATAATACTT 17646 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 |||||||| || |||||| ||||| Sbjct 17645 TCCAGCTATACTCTGAGGGTCTTC 17622 Score = 152 bits (168), Expect = 6e-32 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2205 AAACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAG 2264 ||| ||| |||||| || | | || |||||| ||| || |||| ||| ||||||| Sbjct 14806 AAATTGAGGAACATACACATTACCAGCCACAGTGAACCACCTGGGAATAGGACCTGCGAG 14747 Query 2265 ATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCC 2324 ||||| |||||||| ||||| ||| |||| |||| ||| |||| |||| ||| || || Sbjct 14746 ATCCACCTGACCTGCTCTGTGGAGAATCCAAATGGCAATGTCTCATTCAGGTGGCAGACC 14687 Query 2325 TTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGC 2384 | || || | |||||| | || || |||||||| | ||||||||||||| || | Sbjct 14686 TCAGGAAACATACTTCTAAGTGAACCAAACCTCACTATCTCCTGGGACCCCCAAAATTCC 14627 Query 2385 AGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTC 2444 ||||| || |||||||| ||||| || | || | || ||||| | || | | | ||| Sbjct 14626 AGTGAACAAAACTACACCTGCATAGCTCAGAATCCCGTTGGCAATTTATCCTCCTCTGTC 14567 Query 2445 TCGGCCCAGAAGCTGTG 2461 || |||||||| || || Sbjct 14566 TCTGCCCAGAACCTCTG 14550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628981403643320