Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq194 111 2e-19 seq5886 107 2e-18 seq1400 96.9 4e-15 >seq194 Length=1934172 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 227009 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 226950 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 226949 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 226890 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 226889 ACAACACGT 226881 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||||||| || |||| |||| || || || || |||||||||| Sbjct 228470 CATCACTCCCATCCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 228412 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 228411 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 228378 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || ||||||||||| || | ||||||||||||||| || || ||||| || || Sbjct 225193 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 225134 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543 || || || ||||| ||||| | |||||| | |||| ||||| || Sbjct 225133 AATTTGGAAGCCATAGAAACAGCGAGCTTCTG-TAATCTGAACTTC 225089 >seq5886 Length=918977 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 173080 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 173139 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 173140 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 173199 Query 37318 CTAC 37321 | || Sbjct 173200 CCAC 173203 >seq1400 Length=560904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/242 (70%), Gaps = 7/242 (3%) Strand=Plus/Minus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| |||||||| || ||||| || |||||||| || || |||||||| | | Sbjct 277766 CCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCT 277707 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| |||| | || || || || || || |||||||| ||||| || || || Sbjct 277706 TTCTTTGGAATCTTTAAT----GTGTCCATGAGGAA-CTATACATCTCAGAATGTATGTT 277652 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAA 37548 || || || || || || ||||| ||||| ||||| | |||| ||||| || | Sbjct 277651 TTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTG-TAATCTGAACGTCTTGGC 277593 Query 37549 AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 ||| | || || |||| ||||| ||| | || | || |||||||||||||| |||| Sbjct 277592 TAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGCCAGAA 277533 Query 37609 CA 37610 || Sbjct 277532 CA 277531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592032732266680