Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq324 178 2e-39 seq3825 136 7e-27 seq3312 91.5 3e-13 seq98 91.5 3e-13 >seq324 Length=328752 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| || |||||||| Sbjct 99922 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGAGCCACCTGC 99981 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || ||| | ||||| || ||||| || | |||||| |||||| Sbjct 99982 TCCCGGAGGAGGCCGGCAGTACTCGACAGCCCGGCGTTCTCGGCCTTGAGTGTCTTCACC 100041 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||||||||| || ||| ||||| || ||||| |||| Sbjct 100042 TTGTCCTCCAGGCGCGCGATGCGTTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCAGC 100101 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 100102 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 100161 Query 241625 GAC 241627 ||| Sbjct 100162 GAC 100164 >seq3825 Length=201389 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| |||||||| | | ||| || | ||| Sbjct 27922 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAGGCTCGCTGTGGACGCCAGC 27981 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 27982 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCAAGGCGCGAGATGCGCTCCAGC 28041 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | ||| || || || | ||| || || |||||| Sbjct 28042 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGATTGCGCAGCCGCTTGCGCTCTGCCTTG 28101 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 28102 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 28134 >seq3312 Length=744609 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 162287 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 162346 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 162347 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 162406 Query 241619 ATCGGAGA 241626 || || || Sbjct 162407 ATGGGGGA 162414 >seq98 Length=373882 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || || |||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 61339 GTATATTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 61280 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| || | || |||||| ||| Sbjct 61279 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGAGTTCCTGTCTCTGTCTG 61221 Query 213647 GGAC 213650 ||| Sbjct 61220 AGAC 61217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931086048513280