Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3902 179 2e-39 seq4056 143 2e-28 seq4058 131 1e-24 seq566 129 4e-24 seq4625 86.0 4e-11 >seq3902 Length=329337 Score = 179 bits (198), Expect = 2e-39 Identities = 369/540 (68%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||||| |||| | || || || ||| ||||| | ||| | || ||| || Sbjct 124354 TGCAGTTGGTACTGATCTTGGCACCACCTACTCTTGTGAGGGTGTCTTCCAGCATGAAAA 124295 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||| | |||||||||||| || || || | || || ||| || || | ||||| Sbjct 124294 AGTAGAGACAATTGCCAATGATCAGGGAAACTGCACCACTCCAAGCTACATTGCCTTTAC 124235 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 | | || ||| | ||||| |||||||| || |||||| |||| || || || Sbjct 124234 TAATACCAAACGATTGATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAACCCCACCAA 124175 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || |||||||||| ||| ||||| | | | ||||||||| | ||| | || Sbjct 124174 CACGTTTTTTGATGCCAAACATCTGATTAGATGCAGATTTGATGATGCTGTTGTGTAGTC 124115 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA-ACCATATATAGAAG 474626 ||||||| |||||||||||| |||| | |||| || || || || | | ||| Sbjct 124114 TGATATGAAGCATTGGCCTTTTGTGGTGGTGAATGGTGCAGGCAAGGCCCAAGGTCCAAG 124055 Query 474627 --CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | || || || ||| || | || || | | || || |||||| | Sbjct 124054 TAGAATACAAG--GGAGAGACAAAAAGTTTCTATCCTGAGGAGGTGTCATCTATGGTTCT 123997 Query 474685 AGCCAAAATGAAACAAACCGCGAGCT-CATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 | || ||||| |||| | ||| | | ||||||||| |||| || || ||| || Sbjct 123996 GACAAAGATGAAGGAAACTG-GAGATGCCTATCTTGGA-AAGACTGTTACCATTGCTGTG 123939 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || ||||| || |||||||| ||||| | ||| || || ||||||| |||| Sbjct 123938 GTCACAGTGCCAGCTTACTTTAATGACTCTCAGCATCAGGCTACCAAAGATGATGGAACC 123879 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||||||||| | | ||||| ||||||||||| || | || ||||||| Sbjct 123878 ATTGCTAGTCTTAATGTTCTTAGGATTATAAATGAACCAACTGCTACTGCTACTGCTTAT 123819 Score = 136 bits (150), Expect = 3e-26 Identities = 440/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||| ||||||| |||| ||||| || | | | | ||| || Sbjct 123575 ACTGCTTGTGAACATGCTAAGTATACTCTGTCTTCCAGCACCAAGGCCAGTATTGTGATT 123516 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| |||| ||||||||| || | || | | ||| | || |||||||||| Sbjct 123515 GATTCACTTTATGAAGGAATAGACTTCCATGCCTCCACTACCTGTGCCCAATTTGAAGAA 123456 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 || | ||||||| || | || | || || || || ||| || |||| Sbjct 123455 TTTAATGCTGATCTGTTCCGTGGCACCCTAGACCCTGTAGAGGAAGCCCTTCAAGATGTC 123396 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| ||||| | ||||| ||||| || || || ||| || | || || Sbjct 123395 AAACTAGACAAGTCACAGATTCATGACATTGTCCTGGTTGGTAGTTTTACCTGTATCCCC 123336 Query 475736 AAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAAT 475795 || || | | | || | | | || ||||| ||| | | | | | ||| | || Sbjct 123335 AAGATTCAAAAGCTTCTGTAAGACTTCTTCAATGGAAAAGAACTGAGTAAGAGTATCAAC 123276 Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC---AGGTCAA 475852 |||||||| ||| |||| |||| || |||||||||| || || | || || || Sbjct 123275 CCTGATGAGGCTTTTGCTTATGCTGCAGCTGTCCAAGTGGCCATCCTGTCTGAAGAGAAA 123216 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||||| | | || | |||| | || || ||||| ||||| | ||| || Sbjct 123215 TC---TGAGAATGTTCAAGATTTGCTACTCTTGGATGTCACTCCTCTTTCTCTTGGTATT 123159 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| | ||| || |||||||| || ||| | | || ||| | || || ||| Sbjct 123158 GAAACTGCTGGTGGAGTTATGACTGCACTCATTAAGTGCAACACTACCATTCCTACCAAG 123099 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | || | || | || || ||||| || || | ||| ||| || | | Sbjct 123098 CAGACATAGACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCATTCAGGTTTAC 123039 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | || || ||||| ||| ||||| | ||| | || ||| Sbjct 123038 GAAGGTGAATGGGTCAGGACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGC 122979 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||||| ||| | || |||||||| ||||||| ||||| |||||||||| ||| Sbjct 122978 ATACCTCCTG--CCCTGTGGTGTTCCTCATGTTGAAGTCACTTTCAATATTGATGCCAAT 122921 Query 476153 GGTATTCTTAATGTTACTGCT 476173 || ||||| ||||| ||||| Sbjct 122920 GGCATTCTCAATGTCTCTGCT 122900 >seq4056 Length=244935 Score = 143 bits (158), Expect = 2e-28 Identities = 364/551 (66%), Gaps = 2/551 (0%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| || || || || || || || || || ||| || || | || | || | | Sbjct 177134 GAATGGCCATAGGCATCGACTTGGGCACCACCTACTCGTGCGTGGGGGTGTTCCAGCACG 177193 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || |||||||||||||| || || | || || || || || | | Sbjct 177194 GCAAGGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCT 177253 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || ||| || ||||||||||| || || | || | || ||||| Sbjct 177254 TTACAGACACAGAAAGGCTCATTGGAGATGCCGCCAAGAACCAGGTAGCCATGAATCCCC 177313 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | ||| | Sbjct 177314 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTTGTGC 177373 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 |||| |||||| | |||||||||| | ||||| |||| || || ||||| | | Sbjct 177374 AATCAGATATGAAACTTTGGCCTTTTCAAGTGATCAATGAAGGAGGAAAACCGAAGGTGC 177433 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | || ||| || | |||| || | || || |||| ||||| ||||| Sbjct 177434 TCGTGTCCTACAAAGGGGAGAATAAAGCTTTCTACCCTGAGGAAATCTCTTCGATGGTAC 177493 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | || ||||| | || || ||| | | | | || | || || |||| || Sbjct 177494 TGACTAAGATGAAGGAGACTGCTGAG-GCTTTTTTGGGCTACCCTGTCACGAATGCTGTG 177552 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || ||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 177553 ATCACAGTGCCAGCCTATTTCAATGACTCTCAACGGCAGGCTACAAAGGATGCAGGTGTG 177612 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || || ||||| || | || || |||||||| ||||| || || |||| || Sbjct 177613 ATTGCGGGACTCAATGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCCTAC 177672 Query 474863 GGTCTTGATAA 474873 ||| | ||||| Sbjct 177673 GGTTTAGATAA 177683 >seq4058 Length=432559 Score = 131 bits (144), Expect = 1e-24 Identities = 363/546 (66%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATT-TAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386 |||||||| |||| ||| | || || ||||| |||||| ||| | || |||| | Sbjct 203266 TGCAATTGTTATTAATTCTTGGTACCACTTAGTCTTGTGTGAATGTCTTCTAACATGGAA 203207 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATC----ATATGTTTCT 474442 ||||||| |||||||||||||| || || || |||| | | | | | || | Sbjct 203206 AAGTAGAGATAATTGCCAATGATCAGGGAAACTGAACCCCTCAAGCTAGTAAGTGCTGTC 203147 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 |||||||| || || | ||||| |||||||| || |||||| |||| || ||| Sbjct 203146 TTTACTGATACCAAATGATTCATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAACCCT 203087 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 | | | |||||||| ||| ||| |||| | | ||||||||| |||| Sbjct 203086 ACCACAATGGTGTTTGATGCCAAACATCTGACTGGTTGCAGATTTGATGAT---GTTGTC 203030 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 || ||||| ||| |||||||| | | | || | | || || | | || | | Sbjct 203029 CAGTCTGACATGAAGCATTGGCCCCTCATGCTGGTGAGTGATGCCAGCAGGCCCAAGGTC 202970 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAA-ATTTCTTCAATGGT 474681 ||| | | || ||| || || ||| | || | | |||| || || || ||||| Sbjct 202969 CAAGTAGAATACAAAGGAGAGAC-AAAAAGGTTCTATCAACACAAGATGTCATCTATGGT 202911 Query 474682 TTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAA-GTAACTGATGC 474738 ||| | |||||||| ||| | | | || ||| |||| ||||| || || |||| Sbjct 202910 TTTGACAAAAATGAAGGAAATCACAGAAACTTGTAT-TTGG--AAGAATGTCACCAATGC 202854 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || | | | ||||| || |||||||||||||| | ||| || | |||||||| || Sbjct 202853 TGTGGTCATAGCACCAGCTTACTTTAATGATTCTCACCATCAGGCTAGCAAAGATGCTGG 202794 Query 474799 AA-GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 || | |||| ||||| ||||| | | ||||| ||||| ||||| || | || ||| Sbjct 202793 AACCATTTGCTGGTCTCAATGTATATAGGATTATCAATGAGCCAACTGCTTCTGCTATTG 202734 Query 474858 CTTATG 474863 |||||| Sbjct 202733 CTTATG 202728 >seq566 Length=636019 Score = 129 bits (142), Expect = 4e-24 Identities = 310/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||||||| |||| | ||||| ||||| ||||| || || | || | ||| | Sbjct 530899 ACAGCTGGAGATACACACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAACCAT--T 530956 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGCATT 475482 | ||| || |||||| | || |||| || ||| | | || | | ||| | Sbjct 530957 TTATTGCCGAGTTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAATAAG--AGAGCTGT 531014 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 |||| || | ||||||||||||||||||||||| |||| ||||| || || | Sbjct 531015 CCGACGCCTCCGTACTGCTTGTGAACGTGCTAAGCGTACTCTATCTTCCAGCACCCAGGC 531074 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | | |||| ||||||| |||| ||||||||| || | |||| ||||| | || Sbjct 531075 CAGTATTGAGATTGATTCACTTTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGC 531134 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 ||||||||| | | ||||||| || | || | || || || || ||| Sbjct 531135 CCGATTTGAAGAACTGAATGCTGATCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGC 531194 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 || ||||| | ||||| ||||| ||||| ||||||| || || || || || ||||| Sbjct 531195 CCTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGATATCGTCCTGGTTGGTGGTTC 531254 Query 475723 AACAAGAATTCCAAAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTT 475779 || | ||||| || || ||| ||| | || | | || ||||| || | | Sbjct 531255 TACCCGCATTCCCAAGAT---TCAAAAGCTTCTGCAAGACTTCTTCAATGGAAAGGAACT 531311 Query 475780 AAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 ||| | ||| | || |||||||| |||||||| ||||| || Sbjct 531312 GAATAAGAGTATCAACCCTGATGAGGCTGTTGCTTATGGTGC 531353 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || |||||||| ||||| ||||| || || ||||||| Sbjct 530578 ATGCTGTGGTCACAGTGCCAGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATG 530637 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| |||||| | | ||||| ||||||||||| || || || Sbjct 530638 CTGGAACCATTGCTGGTCTCAATGTTCTTAGGATTATAAATGAACCAACTGCTGCTGCTA 530697 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || || || Sbjct 530698 TTGCTTATGGCCTAGACAAAAA 530719 Score = 111 bits (122), Expect = 1e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| |||||| | ||| | || |||| || Sbjct 529556 TGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAA 529615 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||||| |||||||||||||| || || || |||| || ||| |||||| | ||||| Sbjct 529616 GGTAGAGATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTTGCCTTTAC 529675 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 ||| || |||| | || || |||||||| || |||||| |||| ||||| Sbjct 529676 TGATACCGAACGATTGATCGGTGATGCTGCGAAGAATCAAGTTGCAATGAATCC 529729 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | | ||||| ||||| ||| ||||| | ||| | || ||| Sbjct 532024 GAAGGTGAACGTGCCATGACTAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGC 532083 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| ||| Sbjct 532084 ATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAAT 532143 Query 476153 GGTATTCTTAATGT 476166 || ||||||||||| Sbjct 532144 GGCATTCTTAATGT 532157 >seq4625 Length=314844 Score = 86.0 bits (94), Expect = 4e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||||||||||| || | ||| || |||| ||||||||||||||| Sbjct 137111 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTTCCTT 137170 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| || || ||||| | | || | | || || || Sbjct 137171 ATCCTGGATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAGTGAT 137230 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 || || || || || || || |||||||| Sbjct 137231 GGTCTTCCCTGTAAGGGTTTTTACGAAAAT 137260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266533453213316